| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3744 |
|---|
| Symbol | rpoH |
|---|
| ID | 6144026 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 3811178 |
|---|
| End bp | 3812032 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641618570 |
|---|
| Product | RNA polymerase factor sigma-32 |
|---|
| Protein accession | YP_001745710 |
|---|
| Protein GI | 170683649 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 58 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGACA AAATGCAAAG TTTAGCTTTA GCCCCAGTTG GCAACCTGGA TTCCTACATC
CGGGCAGCTA ACGCGTGGCC GATGTTGTCG GCTGACGAGG AGCGGGCGCT GGCTGAAAAG
CTGCATTACC ATGGCGATCT GGAAGCAGCT AAAACGCTGA TCCTGTCTCA CCTGCGGTTT
GTTGTTCATA TTGCTCGTAA TTATGCGGGC TATGGCCTGC CACAGGCGGA TTTGATTCAG
GAAGGTAACA TCGGCCTGAT GAAAGCAGTG CGCCGTTTTA ACCCGGAAGT GGGTGTGCGC
CTGGTCTCCT TCGCCGTTCA CTGGATCAAA GCAGAGATCC ACGAATACGT TCTGCGCAAC
TGGCGTATCG TCAAAGTTGC GACCACCAAA GCGCAGCGCA AACTGTTCTT CAACCTGCGT
AAAACCAAGC AGCGTCTGGG CTGGTTTAAT CAGGATGAAG TCGAAATGGT GGCCCGTGAA
CTGGGCGTAA CCAGCAAAGA CGTACGTGAG ATGGAATCGC GTATGGCGGC ACAGGACATG
ACCTTTGACC TGTCTTCCGA TGACGATTCC GACAGCCAGC CGATGGCTCC GGTGCTCTAT
CTGCAGGATA AATCATCTAA CTTTGCTGAC GGCATCGAAG ATGATAACTG GGAAGAGCAG
GCGGCAAACC GTCTGACCGA CGCGATGCAA GGTCTGGACG AGCGTAGCCA GGATATCATC
CGCGCGCGCT GGCTGGACGA AGACAACAAG TCCACGTTGC AGGAACTGGC TGACCGTTAC
GGTGTTTCCG CTGAGCGTGT GCGTCAGCTG GAAAAGAACG CGATGAAAAA ATTGCGCGCT
GCCATTGAAG CGTAA
|
|---|
| Protein sequence | MTDKMQSLAL APVGNLDSYI RAANAWPMLS ADEERALAEK LHYHGDLEAA KTLILSHLRF
VVHIARNYAG YGLPQADLIQ EGNIGLMKAV RRFNPEVGVR LVSFAVHWIK AEIHEYVLRN
WRIVKVATTK AQRKLFFNLR KTKQRLGWFN QDEVEMVARE LGVTSKDVRE MESRMAAQDM
TFDLSSDDDS DSQPMAPVLY LQDKSSNFAD GIEDDNWEEQ AANRLTDAMQ GLDERSQDII
RARWLDEDNK STLQELADRY GVSAERVRQL EKNAMKKLRA AIEA
|
|---|
| |