| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3672 |
|---|
| Symbol | hofM |
|---|
| ID | 6147446 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 3728761 |
|---|
| End bp | 3729540 |
|---|
| Gene Length | 780 bp |
|---|
| Protein Length | 259 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641618499 |
|---|
| Product | HofM protein |
|---|
| Protein accession | YP_001745639 |
|---|
| Protein GI | 170680610 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0000428263 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 0.166207 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCATTTA AGATCTGGCA AATTGGTTTG CATTTACAAC AGCAAGAAGC GGTAGCGGTT
GCGATCGTGC GGGGCGCAAA AGAATGCTTT TTGCAACGCT GGTGGCGGTT GCCGCTGGAG
AATGACATTA TCAAAGATGG GCGGATTGTT GATGCGCAGC GGCTGGCTAA CACGTTGTTA
CCGTGGAGCC GCGAACTGCC GCAGCGTCAT CACATTATGT TGGCGTTTCC CGCCAGTCGC
ACATTACAGC GGTCATTTCC GCGCCCGTCG ATGTCCCTTG GTGAGCGGGA GCAAACGGCC
TGGCTGTCCG GGACGATGGC CCGTGAACTG GATATGGATC CGGACTCCCT GCGCTTCGAT
TACAGCGAAG ACTCACTCAG TCCCGCCTAT AACGTGACTG CCGCGCAAAG CAAAGAGCTG
GCAACGCTGC TTACTCTGGC AGAAAGGTTG CGTGTTCATG TTAGCGCGAT CACCCCGGAT
GCCAGTGCAT TACAGCGATT CCTGCCTTTT TTACCTTCTC ATCAGCAATG TCTGGCCTGG
CGTGATAACG AACAGTGGCT GTGGGCGACG CGCTATCGCT GGGGGCGCAA ACTGGCGGTG
GGGATGACTA GCGCGAAGGA GCTGGCGGCA GCGTTATCCG TTGATCCCGA AAGCGTCGCG
CTATGTGGCG AAGGCGGATT TGATCCCTGG GAGGCCGTTT CTGTTCGTCA GCCGCCGCTA
CCGCCGCCAG GTGGAGACTT TGCCATCGCG CTGGGGCTGG CGCTAGGGAA GGCGAACTGA
|
|---|
| Protein sequence | MAFKIWQIGL HLQQQEAVAV AIVRGAKECF LQRWWRLPLE NDIIKDGRIV DAQRLANTLL
PWSRELPQRH HIMLAFPASR TLQRSFPRPS MSLGEREQTA WLSGTMAREL DMDPDSLRFD
YSEDSLSPAY NVTAAQSKEL ATLLTLAERL RVHVSAITPD ASALQRFLPF LPSHQQCLAW
RDNEQWLWAT RYRWGRKLAV GMTSAKELAA ALSVDPESVA LCGEGGFDPW EAVSVRQPPL
PPPGGDFAIA LGLALGKAN
|
|---|
| |