| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3667 |
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| Symbol | hofQ |
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| ID | 6144186 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 3726254 |
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| End bp | 3727492 |
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| Gene Length | 1239 bp |
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| Protein Length | 412 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 641618494 |
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| Product | outer membrane porin HofQ |
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| Protein accession | YP_001745634 |
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| Protein GI | 170681657 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000045876 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 0.0733814 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCAAT GGATAGCCGC ACTACTGTTG ATGCTGATAC CCGGCGTACA GGCGGCAAAG
CCGCAAAAAG TGACACTGAT GGTGGATGAC GTTCCGGTAG CTCAGGTGTT GCAGGCGCTG
GCTGAACAGG AGAAGTTGAA CCTGGTGGTG TCGCCAGACG TCAGCGGTAC GGTGTCGTTA
CATCTAACAG ATGTTCCCTG GAAGCAGGCA CTACAAACTG TAGTGAAAAG CGCCGGACTG
ATAACGCGCC AGGAGGGCAA CATTCTCTCA GTGCATTCCA TTGCCTGGCA GAATGACAAT
ATCGCCCGTC AGGAAGCGGA GCAGGCGCGG GCGCAGGCAA ATCTGCCGCT GGAAAATCGC
AATATTACTC TGCAATACGC CGACGCCGGA GAGCTGGCGA AAGCTGGGGA GAAGCTACTG
AGTGCCAAAG GGAGTATGAC CGTCGATAAA CGCACCAATC GCCTTTTGCT GCGAGATAAC
AAAACGGCGT TAAGCGCCCT TGAACAGTGG GTAGCGCAAA TGGATCTGCC GGTCGGGCAA
GTTGAGCTGT CGGCGCATAT TGTCACCATT AATGAAAAAA GTTTGCGTGA GTTAGGCGTG
AAATGGACGC TGGCCGATGC GCAACAAGCT GGTGGCGTTG GGCAAGTCAC CACGCTTGGC
AGCGACCTCT CCGTAGCGAC GGCGACAACG CATGTCGGTT TTAACATTGG GCGTATCAAC
GGACGTTTGC TGGATCTTGA GCTTTCTGCG CTCGAACAAA AACAGCAGCT GGATATTATC
GCCAGTCCGC GTCTGCTGGC CTCACATCTT CAGCCTGCCA GCATTAAACA GGGGAGCGAA
ATTCCATATC AGGTTTCCAG CGGGGAAAGT GGCGCGACGT CGGTGGAATT TAAAGAGGCC
GTCCTGGGGA TGGAGGTCAC GCCCACGGTG TTACAAAAAG GTCGCATCCG GCTGAAATTA
CACATCAGCC AGAACGTTCC GGGGCAGGTG CTACAGCAGG CCGATGGCGA AGTGCTGGCG
ATTGATAAGC AGGAGATCGA AACGCAGGTC GAGGTCAAAA GCGGAGAAAC GTTGGCGCTG
GGCGGCATTT TTACCCGTAA AAATAAATCG GGTCAGGATA GCGTACCGTT GCTTGGCGAC
ATTCCCTGGT TCGGGCAATT ATTTCGTCAT GACGGAAAAG AAGATGAACG ACGCGAGTTA
GTGGTGTTTA TCACGCCACG ACTGGTTTCC AGTGAGTAA
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| Protein sequence | MKQWIAALLL MLIPGVQAAK PQKVTLMVDD VPVAQVLQAL AEQEKLNLVV SPDVSGTVSL
HLTDVPWKQA LQTVVKSAGL ITRQEGNILS VHSIAWQNDN IARQEAEQAR AQANLPLENR
NITLQYADAG ELAKAGEKLL SAKGSMTVDK RTNRLLLRDN KTALSALEQW VAQMDLPVGQ
VELSAHIVTI NEKSLRELGV KWTLADAQQA GGVGQVTTLG SDLSVATATT HVGFNIGRIN
GRLLDLELSA LEQKQQLDII ASPRLLASHL QPASIKQGSE IPYQVSSGES GATSVEFKEA
VLGMEVTPTV LQKGRIRLKL HISQNVPGQV LQQADGEVLA IDKQEIETQV EVKSGETLAL
GGIFTRKNKS GQDSVPLLGD IPWFGQLFRH DGKEDERREL VVFITPRLVS SE
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