| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3648 |
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| Symbol | nirD |
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| ID | 6147475 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 3708680 |
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| End bp | 3709006 |
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| Gene Length | 327 bp |
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| Protein Length | 108 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 641618475 |
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| Product | nitrite reductase small subunit |
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| Protein accession | YP_001745615 |
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| Protein GI | 170684098 |
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| COG category | [P] Inorganic ion transport and metabolism
[R] General function prediction only |
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| COG ID | [COG2146] Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases |
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| TIGRFAM ID | [TIGR02378] nitrite reductase [NAD(P)H], small subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.0000746373 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAGCCAGT GGAAAGACAT CTGCAAAATC GATGACATCC TGCCTGAAAC CGGCGTCTGC
GCGCTGTTAG GTGACGAGCA GGTAGCAATT TTCCGCCCGT ATCACAGCGA CCAGGTGTTT
GCGATCAGCA ACATCGACCC GTTCTTCGAG TCCAGCGTGC TGTCACGCGG GCTGATTGCG
GAACACCAGG GCGAGCTGTG GGTCGCCAGC CCGCTGAAAA AACAGCGTTT TCGCTTAAGC
GACGGCTTGT GCATGGAAGA CGAACAGTTT TCCGTCAAGC ATTACGACGC GCGAGTGAAA
GACGGCGTGG TGCAGCTACG CGGTTAA
|
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| Protein sequence | MSQWKDICKI DDILPETGVC ALLGDEQVAI FRPYHSDQVF AISNIDPFFE SSVLSRGLIA
EHQGELWVAS PLKKQRFRLS DGLCMEDEQF SVKHYDARVK DGVVQLRG
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