Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_3647 |
Symbol | nirB |
ID | 6146964 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | + |
Start bp | 3706140 |
End bp | 3708683 |
Gene Length | 2544 bp |
Protein Length | 847 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 641618474 |
Product | nitrite reductase [NAD(P)H], large subunit |
Protein accession | YP_001745614 |
Protein GI | 170683252 |
COG category | [C] Energy production and conversion |
COG ID | [COG1251] NAD(P)H-nitrite reductase |
TIGRFAM ID | [TIGR02374] nitrite reductase [NAD(P)H], large subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.000297498 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGCAAAG TCAGACTCGC AATTATCGGT AACGGTATGG TCGGCCATCG CTTTATCGAA GATCTTCTTG ATAAATCTGA TGCGGCCAAC TTTGATATTA CCGTTTTCTG TGAAGAACCG CGCATCGCTT ATGACCGCGT ACACCTCTCG TCTTACTTCT CTCACCACAC CGCCGAAGAG CTGTCGCTGG TGCGCGAAGG CTTCTACGAG AAACACGGCA TCAAAGTTCT GGTCGGTGAA CGCGCTATCA CCATCAACCG TCAGGAGAAG GTGATTCACT CCAGCGCCGG ACGTACCGTT TTTTATGACA AGCTGATCAT GGCAACCGGT TCCTACCCGT GGATCCCGCC AATCAAAGGT TCTGATACTC AGGACTGCTT TGTCTATCGC ACCATTGAAG ACCTCAACGC CATTGAATCC TGTGCCCGTC GCAGCAAACG CGGTGCCGTT GTTGGTGGCG GCCTGTTAGG TCTGGAAGCC GCTGGCGCGC TGAAAAACTT AGGTATTGAA ACCCACGTTA TCGAATTTGC CCCTATGCTG ATGGCGGAAC AGCTTGATCA GATGGGTGGC GAGCAGCTGC GTCGCAAAAT CGAAAGTATG GGCGTGCGCG TTCACACCAG CAAAAACACC CTTGAGATTG TGCAGGAAGG TGTCGAAGCG CGTAAAACCA TGCGTTTTGC CGACGGTAGC GAGCTGGAAG TCGACTTTAT CGTCTTCTCA ACCGGTATCC GTCCGCGCGA TAAGCTGGCA ACCCAGTGTG GTCTGGACGT TGCTCCGCGT GGGGGTATTG TCATCAATGA TTCCTGCCAG ACTTCCGATC CGGATATCTA CGCCATCGGT GAATGCGCAA GCTGGAACAA CCGTGTATTT GGTCTGGTAG CACCAGGCTA CAAAATGGCG CAGGTCGCCG TTGACCATAT TCTTGGTAGC GAAAACGCCT TTGAAGGTGC TGACCTTAGC GCTAAGCTGA AACTGCTGGG CGTAGACGTA GGCGGTATTG GTGATGCGCA TGGTCGCACG CCTGGCGCAC GTAGCTACGT TTACCTCGAC GAAAGCAAAG AGATCTACAA ACGCCTGATT GTCAGCGAAG ACAACAAAAC CCTGCTCGGT GCGGTACTGG TGGGCGATAC CAGCGACTAC GGCAACCTGC TGCAACTGGT GCTGAACGCT ATCGAACTGC CGGAAAACCC GGATTCTCTG ATTCTGCCGG CGCACTCAGG TAGCGGTAAG CCGTCTATCG GTGTTGATAA ACTGCCGGAC AGCGCGCAAA TCTGCTCCTG CTTCGACGTC ACCAAAGGCG ATCTGATTGC AGCTATCAAC AAAGGCTGCC ACACCGTTGC GGCGCTGAAA GCTGAAACCA AAGCGGGTAC TGGCTGCGGT GGCTGTATCC CGCTGGTCAC TCAGGTACTG AACGCGGAAC TGGCGAAACA GGGCATCGAA GTTAACAACA ACCTGTGCGA ACACTTTGCT TATTCGCGTC AGGAACTGTT CCATTTGATC CGCGTTGAAG GCATTAAAAC CTTCGAAGAA CTGCTGGCGA AACACGGCAA AGGCTACGGT TGTGAAGTTT GTAAACCGAC CGTCGGTTCG CTGCTGGCCT CCTGCTGGAA CGAATACATT CTGAAGCCGG AACATACTCC GCTGCAGGAT TCAAACGACA ACTTCCTCGC TAACATCCAG AAAGACGGCA CCTACTCGGT GATCCCGCGT TCTCCGGGCG GTGAAATCAC CCCGGAAGGG CTGATGGCAG TAGGTCGTAT CGCGCGTGAA TTTAATCTCT ACACCAAAAT CACCGGCTCT CAGCGCCTGG CGATGTTTGG CGCACAGAAA GACGATCTGC CGGAAATCTG GCGTCAGCTG ATTGAAGCCG GCTTCGAAAC CGGTCATGCC TATGCGAAAG CACTGCGTAT GGCGAAAACC TGCGTGGGTA GCACCTGGTG CCGCTACGGC GTTGGCGACA GCGTCGGCCT CGGCGTGGAA CTGGAAAACC GCTACAAAGG CATCCGTACG CCGCACAAAA TGAAGTTCGG TGTCTCTGGC TGTACCCGTG AATGTTCAGA AGCTCAGGGT AAAGACGTGG GTATCATCGC CACCGAAAAA GGCTGGAACC TGTATGTTTG CGGTAACGGC GGCATGAAAC CGCGTCATGC GGATCTGCTG GCAGCGGATA TCGATCGCGA AACGCTGATT AAATATCTTG ACCGCTTCAT GATGTTCTAC ATCCGTACTG CCGACAAACT GACGCGTACC GCGCCGTGGT TAGAAAACCT CGAAGGTGGC ATCGATTACC TGAAAGCGGT GATCATTGAC GACAAACTGG GGCTGAACGC ACATCTGGAA GAAGAGATGG CGCGCCTGCG TGAAGCGGTA GTGTGTGAGT GGACTGAAAC GGTCAATACA CCGTCCGCGC AGACTCGCTT CAAACACTTC ATCAACAGCG ACAAGCGTGA CCCGAACGTG CAGATGGTGC CAGAGCGCGA ACAGCACCGT CCGGCAACGC CGTATGAACG TATCCCGGTA ACTCTGGTGG AGGACAACGC ATGA
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Protein sequence | MSKVRLAIIG NGMVGHRFIE DLLDKSDAAN FDITVFCEEP RIAYDRVHLS SYFSHHTAEE LSLVREGFYE KHGIKVLVGE RAITINRQEK VIHSSAGRTV FYDKLIMATG SYPWIPPIKG SDTQDCFVYR TIEDLNAIES CARRSKRGAV VGGGLLGLEA AGALKNLGIE THVIEFAPML MAEQLDQMGG EQLRRKIESM GVRVHTSKNT LEIVQEGVEA RKTMRFADGS ELEVDFIVFS TGIRPRDKLA TQCGLDVAPR GGIVINDSCQ TSDPDIYAIG ECASWNNRVF GLVAPGYKMA QVAVDHILGS ENAFEGADLS AKLKLLGVDV GGIGDAHGRT PGARSYVYLD ESKEIYKRLI VSEDNKTLLG AVLVGDTSDY GNLLQLVLNA IELPENPDSL ILPAHSGSGK PSIGVDKLPD SAQICSCFDV TKGDLIAAIN KGCHTVAALK AETKAGTGCG GCIPLVTQVL NAELAKQGIE VNNNLCEHFA YSRQELFHLI RVEGIKTFEE LLAKHGKGYG CEVCKPTVGS LLASCWNEYI LKPEHTPLQD SNDNFLANIQ KDGTYSVIPR SPGGEITPEG LMAVGRIARE FNLYTKITGS QRLAMFGAQK DDLPEIWRQL IEAGFETGHA YAKALRMAKT CVGSTWCRYG VGDSVGLGVE LENRYKGIRT PHKMKFGVSG CTRECSEAQG KDVGIIATEK GWNLYVCGNG GMKPRHADLL AADIDRETLI KYLDRFMMFY IRTADKLTRT APWLENLEGG IDYLKAVIID DKLGLNAHLE EEMARLREAV VCEWTETVNT PSAQTRFKHF INSDKRDPNV QMVPEREQHR PATPYERIPV TLVEDNA
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