Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_3584 |
Symbol | rsmB |
ID | 6146958 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | + |
Start bp | 3662442 |
End bp | 3663731 |
Gene Length | 1290 bp |
Protein Length | 429 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 641618411 |
Product | 16S rRNA methyltransferase B |
Protein accession | YP_001745551 |
Protein GI | 170684100 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.287379 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 0.154829 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAAAAC AACGTAATTT ACGTAGCATG GCGGCCCAGG CCGTTGAACA AGTCGTCGAG CAAGGGCAAT CATTAAGCAA CATTCTGCCA CCGCTCCAGC AAAAAGTTTC TGATAAAGAC AAAGCACTTC TTCAAGAGTT GTGCTTTGGC GTACTGCGTA CGCTTTCACA GTTAGACTGG CTGATTAATA AGCTAATGGC CCGTCCGATG ACAGGCAAAC AGCGTACTGT TCATTACCTG ATTATGGTTG GTTTGTATCA ACTGCTTTAT ACCCGCATTC CACCTCATGC CGCGCTGGCT GAAACGGTTG AAGGCGCTAT CGCAATTAAG CGCCCGCAAC TTAAAGGGTT GATAAACGGT GTATTACGCC AGTTCCAGCG TCAGCAAGAA GAGTTATTAG CCGAGTTTAA TGCCAGTGAT GCACGTTATC TGCATCCTTC CTGGTTGCTG AAGCGTCTGC AAAAAGCGTA TCCAGAGCAG TGGCAATCCA TCGTCGAAGC CAATAACCAG CGTCCGCCAA TGTGGCTGCG CGTTAATCGT ACGCATCATT CCCGCGACAG GTGGCTTGCA TTGCTGGATG AAGCAGGAAT GAAAGGTTTC CCGCATGCGG ATTACCCTGA TGCTGTACGT CTGGAAACAC CTGCACCTGT TCATGCGCTA CCTGGTTTTG AAGACGGATG GGTTACCGTT CAGGATGCCT CAGCACAAGG TTGCATGACC TGGCTTGCGC CACAAAACGG TGAACACATT TTGGATCTTT GTGCCGCCCC CGGCGGTAAA ACAACGCATA TCCTTGAGGT GGCACCAGAA GCGCAGGTTG TTGCGGTTGA TATTGACGAA CAGCGCCTCT CTCGCGTTTA CGACAATTTA AAACGCCTTG GTATGAAGGC AACCGTGAAA CAAGGTGATG GCCGTTACCC TTCCCAATGG TGTGGCGAGC AACAGTTTGA TCGCATTTTA TTAGATGCGC CTTGTTCAGC AACCGGTGTG ATTCGTCGCC ATCCGGATAT TAAATGGTTA CGTCGCGATC GCGATATCCC GGAACTCGCG CAATTGCAGT CTGAAATTCT CGACGCCATT TGGCCGCATT TAAAATCCGG TGGAACCCTG GTCTATGCCA CCTGTTCGGT GTTACCGGAA GAGAATAGCC TGCAGATTAA AGCCTTTTTG CAACGTACTG CTGATGCCGA ACTTTGCGAA ACAGGAACAC CAGAGCAACC GGGTAAACAA AATCTACCTG GTGCCGAAGA GGGCGACGGC TTCTTTTACG CTAAGCTAAT CAAAAAGTGA
|
Protein sequence | MKKQRNLRSM AAQAVEQVVE QGQSLSNILP PLQQKVSDKD KALLQELCFG VLRTLSQLDW LINKLMARPM TGKQRTVHYL IMVGLYQLLY TRIPPHAALA ETVEGAIAIK RPQLKGLING VLRQFQRQQE ELLAEFNASD ARYLHPSWLL KRLQKAYPEQ WQSIVEANNQ RPPMWLRVNR THHSRDRWLA LLDEAGMKGF PHADYPDAVR LETPAPVHAL PGFEDGWVTV QDASAQGCMT WLAPQNGEHI LDLCAAPGGK TTHILEVAPE AQVVAVDIDE QRLSRVYDNL KRLGMKATVK QGDGRYPSQW CGEQQFDRIL LDAPCSATGV IRRHPDIKWL RRDRDIPELA QLQSEILDAI WPHLKSGGTL VYATCSVLPE ENSLQIKAFL QRTADAELCE TGTPEQPGKQ NLPGAEEGDG FFYAKLIKK
|
| |