Gene EcSMS35_3540 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcSMS35_3540 
SymboltldD 
ID6143370 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli SMS-3-5 
KingdomBacteria 
Replicon accessionNC_010498 
Strand
Start bp3617502 
End bp3618947 
Gene Length1446 bp 
Protein Length481 aa 
Translation table11 
GC content55% 
IMG OID641618369 
Productprotease TldD 
Protein accessionYP_001745516 
Protein GI170680441 
COG category[R] General function prediction only 
COG ID[COG0312] Predicted Zn-dependent proteases and their inactivated homologs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones55 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTCTTA ACCTGGTAAG TGAACAATTG CTAGCGGCGA ACGGCCTGAA ACATCAGGAC 
TTGTTCGCGA TCCTCGGTCA ACTGGCCGAA CGTCGCCTTG ATTATGGCGA TCTCTATTTT
CAGTCGAGCT ATCACGAATC CTGGGTTTTA GAAGACCGCA TTATTAAAGA TGGTTCTTAC
AACATCGATC AGGGCGTTGG TGTGCGTGCA ATCAGCGGTG AAAAAACCGG ATTTGCTTAC
GCTGACCAAA TCAGCCTGCT GGCGCTGGAA CAAAGTGCGC AAGCGGCGCG CACCATCGTC
CGTGATAGTG GTGATGGCAA AGTACAGACG CTGGGCGCGG TAGAGCATAG CCCGTTGTAT
ACCTCGGTAG ATCCGCTGCA AAGCATGAGC CGTGAAGAGA AGCTGGATAT CCTGCGTCGC
GTCGATAAGG TTGCCCGCGA AGCGGACAAG CGCGTACAAG AAGTGACTGC CAGCCTCAGC
GGCGTTTATG AATTAATTCT GGTTGCGGCC ACCGACGGCA CGCTGGCGGC GGATGTTCGT
CCGCTGGTGC GTCTTTCCGT GAGCGTTCTG GTCGAAGAAG ATGGCAAACG CGAACGCGGT
GCCAGTGGCG GCGGCGGTCG TTTTGGTTAT GAGTTCTTCC TTGCCGATCT CGACGGTGAA
GTCCGTGCGG ATGCATGGGC AAAAGAAGCT GTGCGTATGG CGCTGGTCAA TCTTTCTGCC
GTCGCCGCAC CAGCAGGCAC CATGCCGGTA GTACTTGGCG CAGGTTGGCC GGGCGTGCTG
TTGCATGAAG CGGTGGGTCA CGGTCTGGAA GGCGACTTCA ACCGCCGTGG CACTTCAGTA
TTTAGTGGAC AGGTCGGGGA GCTGGTGGCT TCAGAACTGT GTACCGTGGT TGATGACGGT
ACGATGGTCG ATCGCCGTGG TTCGGTGGCG ATTGATGACG AAGGTACGCC AGGCCAGTAC
AACGTGCTGA TTGAGAACGG CATTCTGAAA GGCTACATGC AGGATAAACT CAACGCGCGT
TTGATGGGGA TGACGCCGAC TGGCAACGGT CGCCGTGAAT CCTACGCCCA TCTGCCCATG
CCGCGTATGA CCAACACCTA TATGCTGCCG GGTAAATCGA CCCCGCAGGA AATTATTGAA
TCCGTTGAGT ACGGTATCTA TGCACCGAAC TTTGGTGGCG GTCAGGTGGA TATCACCTCC
GGCAAATTCG TTTTCTCCAC TTCAGAAGCG TATCTGATTG AAAACGGTAA AGTAACGAAG
CCGGTGAAAG GCGCAACGTT GATTGGTTCC GGTATCGAAA CCATGCAGCA GATTTCGATG
GTTGGCAACG ACCTGAAACT GGATAACGGC GTGGGTGTCT GCGGTAAAGA AGGGCAAAGT
TTGCCGGTTG GCGTGGGCCA GCCAACGCTG AAAGTTGATA ACCTGACTGT TGGCGGTACT
GCGTAA
 
Protein sequence
MSLNLVSEQL LAANGLKHQD LFAILGQLAE RRLDYGDLYF QSSYHESWVL EDRIIKDGSY 
NIDQGVGVRA ISGEKTGFAY ADQISLLALE QSAQAARTIV RDSGDGKVQT LGAVEHSPLY
TSVDPLQSMS REEKLDILRR VDKVAREADK RVQEVTASLS GVYELILVAA TDGTLAADVR
PLVRLSVSVL VEEDGKRERG ASGGGGRFGY EFFLADLDGE VRADAWAKEA VRMALVNLSA
VAAPAGTMPV VLGAGWPGVL LHEAVGHGLE GDFNRRGTSV FSGQVGELVA SELCTVVDDG
TMVDRRGSVA IDDEGTPGQY NVLIENGILK GYMQDKLNAR LMGMTPTGNG RRESYAHLPM
PRMTNTYMLP GKSTPQEIIE SVEYGIYAPN FGGGQVDITS GKFVFSTSEA YLIENGKVTK
PVKGATLIGS GIETMQQISM VGNDLKLDNG VGVCGKEGQS LPVGVGQPTL KVDNLTVGGT
A