| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3532 |
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| Symbol | mdh |
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| ID | 6143215 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 3610255 |
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| End bp | 3611193 |
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| Gene Length | 939 bp |
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| Protein Length | 312 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641618361 |
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| Product | malate dehydrogenase |
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| Protein accession | YP_001745508 |
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| Protein GI | 170681278 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0039] Malate/lactate dehydrogenases |
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| TIGRFAM ID | [TIGR01772] malate dehydrogenase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.45791 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 56 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAAGTCG CAGTCCTCGG CGCTGCTGGC GGTATTGGCC AGGCGCTTGC ACTACTGTTA
AAAACCCAAC TGCCTTCAGG TTCAGAACTC TCTCTGTATG ATATCGCTCC AGTGACTCCC
GGTGTGGCTG TCGATCTGAG CCATATCCCT ACTGCTGTGA AAATCAAAGG TTTTTCTGGT
GAAGATGCGA CTCCGGCGCT GGAAGGCGCA GATGTCGTTC TTATCTCTGC AGGCGTAGCG
CGTAAACCGG GTATGGATCG TTCCGACCTG TTTAACGTTA ACGCTGGCAT CGTAAAAAAC
CTGGTACAGC AAGTTGCGAA AACTTGCCCG AAAGCGTGCA TTGGTATTAT CACTAACCCG
GTTAACACTA CAGTGGCGAT TGCTGCTGAA GTGCTGAAAA AAGCCGGTGT TTATGACAAA
AACAAACTGT TCGGCGTTAC CACGCTGGAT ATCATTCGTT CCAACACCTT TGTTGCGGAA
CTGAAAGGCA AACAGCCAGG CGAAGTTGAA GTGCCGGTTA TTGGCGGTCA CTCTGGTGTT
ACCATTCTGC CGCTGCTGTC ACAGGTTCCT GGCGTTAGTT TTACCGAGCA GGAAGTGGCT
GATCTGACCA AACGTATCCA GAACGCGGGT ACTGAGGTGG TTGAAGCGAA AGCCGGTGGC
GGGTCTGCAA CCCTGTCTAT GGGTCAGGCA GCTGCACGTT TTGGTCTGTC TCTGGTACGC
GCACTGCAGG GCGAACAAGG CGTTGTCGAA TGTGCCTACG TTGAAGGTGA CGGTCAGTAC
GCACGTTTCT TCTCTCAACC GCTGCTGCTG GGTAAAAACG GCGTGGAAGA GCGTAAATCT
ATCGGCACTC TGAGCGCATT TGAAAAGAAC GCGCTGGAAG GTATGCTGGA TACGCTGAAG
AAAGATATCG CCCTGGGCGA AGAGTTCGTT AATAAGTAA
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| Protein sequence | MKVAVLGAAG GIGQALALLL KTQLPSGSEL SLYDIAPVTP GVAVDLSHIP TAVKIKGFSG
EDATPALEGA DVVLISAGVA RKPGMDRSDL FNVNAGIVKN LVQQVAKTCP KACIGIITNP
VNTTVAIAAE VLKKAGVYDK NKLFGVTTLD IIRSNTFVAE LKGKQPGEVE VPVIGGHSGV
TILPLLSQVP GVSFTEQEVA DLTKRIQNAG TEVVEAKAGG GSATLSMGQA AARFGLSLVR
ALQGEQGVVE CAYVEGDGQY ARFFSQPLLL GKNGVEERKS IGTLSAFEKN ALEGMLDTLK
KDIALGEEFV NK
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