| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3523 |
|---|
| Symbol | sspB |
|---|
| ID | 6146068 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 3603205 |
|---|
| End bp | 3603702 |
|---|
| Gene Length | 498 bp |
|---|
| Protein Length | 165 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641618352 |
|---|
| Product | ClpXP protease specificity-enhancing factor |
|---|
| Protein accession | YP_001745499 |
|---|
| Protein GI | 170681406 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2969] Stringent starvation protein B |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.000608482 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTGT CACAGCTAAC ACCACGTCGT CCCTATCTGC TGCGTGCATT CTATGAGTGG
TTGCTGGATA ACCAGCTCAC GCCGCACCTG GTGGTGGATG TGACGCTCCC TGGCGTGCAG
GTTCCTATGG AATATGCGCG TGACGGGCAA ATCGTACTCA ACATTGCGCC GCGAGCTGTC
GGCAATCTGG AACTGTCGAA TGATGAGGTG CGCTTTAACG CGCGCTTTGG TGGCATTCCG
CGTCAGGTTT CTGTGCCGCT GGCTGCCGTG CTGGCTATCT ACGCCCGTGA AAATGGCGCA
GGCACGATGT TTGAGCCTGA AGCTGCCTAC GATGAAGATG CCAGCATCAT GAATGATGAA
GAGGCATCGG CAGACAACGA AACCGTTATG TCGGTTATTG ATGGCGACAA GCCAGATCAC
GATGATGACA CTCATCCTGA CGATGAACCA CCGCAGCCAC CACGCGGTGG TCGACCAGCA
TTACGCGTTG TGAAGTAA
|
|---|
| Protein sequence | MDLSQLTPRR PYLLRAFYEW LLDNQLTPHL VVDVTLPGVQ VPMEYARDGQ IVLNIAPRAV
GNLELSNDEV RFNARFGGIP RQVSVPLAAV LAIYARENGA GTMFEPEAAY DEDASIMNDE
EASADNETVM SVIDGDKPDH DDDTHPDDEP PQPPRGGRPA LRVVK
|
|---|
| |