| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3439 |
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| Symbol | agaD |
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| ID | 6146039 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 3517619 |
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| End bp | 3518410 |
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| Gene Length | 792 bp |
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| Protein Length | 263 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641618268 |
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| Product | PTS system N-acetylgalactosamine-specific transporter subunit IID |
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| Protein accession | YP_001745417 |
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| Protein GI | 170681996 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3716] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID |
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| TIGRFAM ID | [TIGR00828] PTS system, mannose/fructose/sorbose family, IID component |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGATCTG AAATCAGTAA AAAAGATATC ACCCGTCTGG GCTTTCGTTC GTCACTGCTG
CAAGCGAGCT TTAACTACGA AAGGATGCAG GCGGGCGGTT TTACCTGGGC GATGTTGCCG
ATCCTGAAAA AGATTTATAA GGACGACAAA CCGGGCCTAA GCGCGGCGAT GAAAGATAAC
CTCGAATTTA TTAATACCCA CCCGAATCTG GTCGGATTCC TGATGGTGTT ATTAATTTCG
ATGGAAGAAA AAGGAGAAAA CCGCGACACC ATTAAAGGCC TCAAAGTGGC ACTGTTTGGC
CCAATCGCCG GGATTGGCGA TGCGATTTTC TGGTTTACCT TATTGCCGAT TATGGCGGGA
ATTTGCTCAT CATTTGCCAG CCAGGGAAAC CTGTTGGGGC CGATTTTGTT TTTCGCCGTT
TACCTGCTTA TCTTCTTCCT GCGCGTCGGC TGGACCCACG TCGGTTATTC AGTCGGCGTG
AAGGCGATCG ATAAAGTGCG AAAGAACTCG CAGATGATTG CTCGTTCGGC AACCATCCTC
GGGATCACGG TAATCGGCGG GCTGATCGCT TCGTATGTGC ATATTAACGT GGTGACATCG
TTTGCCATCG ACAGTACCCA CAGCGTCGCA CTGCAGCAGG ATTTCTTCGA TAAAGTCTTC
CCGAACATTT TACCGATGGC CTACACCCTG CTGATGTATT ACTTCCTGCG GGTGAAAAAA
GCGCATCCGG TGCTGTTAAT CGGCGTGACT TTTGTGCTCT CTATTGTTTG TTCCGCATTC
GGCATTTTGT AA
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| Protein sequence | MGSEISKKDI TRLGFRSSLL QASFNYERMQ AGGFTWAMLP ILKKIYKDDK PGLSAAMKDN
LEFINTHPNL VGFLMVLLIS MEEKGENRDT IKGLKVALFG PIAGIGDAIF WFTLLPIMAG
ICSSFASQGN LLGPILFFAV YLLIFFLRVG WTHVGYSVGV KAIDKVRKNS QMIARSATIL
GITVIGGLIA SYVHINVVTS FAIDSTHSVA LQQDFFDKVF PNILPMAYTL LMYYFLRVKK
AHPVLLIGVT FVLSIVCSAF GIL
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