| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3425 |
|---|
| Symbol | garD |
|---|
| ID | 6145644 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | + |
|---|
| Start bp | 3505118 |
|---|
| End bp | 3506689 |
|---|
| Gene Length | 1572 bp |
|---|
| Protein Length | 523 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641618254 |
|---|
| Product | galactarate dehydratase |
|---|
| Protein accession | YP_001745403 |
|---|
| Protein GI | 170680919 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2721] Altronate dehydratase |
|---|
| TIGRFAM ID | [TIGR03248] galactarate dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 54 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAACA TCGAAATCAG ACAAGAAACG CCAACTGCGT TTTATATAAA AGTTCACGAC
ACAGATAATG TGGCAATTAT TGTTAATGAT AATGGCCTGA AAGCAGGAAC GCGTTTTCCG
GATGGGCTGG AATTAATTGA ACATATTCCC CAGGGGCATA AAGTCGCATT GCTGGACATT
CCAGCTAATG GTGAAATTAT TCGTTATGGC GAAGTGATTG GTTACGCCGT GCGCGCAATC
CCACGCGGAA GCTGGATCGA CGAATCAATG GTTGTACTAC CGGAAGCGCC GCCGTTACAC
ACGCTGCCAC TGGCAACCAA AGTCCCGGAA CCCTTACCGC CGCTGGAAGG ATACACCTTT
GAGGGCTATC GCAATGCCGA TGGCAGCGTG GGCACTAAAA ACCTGCTCGG CATCACCACC
AGCGTCCACT GTGTAGCAGG CGTGGTGGAC TATGTAGTAA AAATCATTGA ACGCGATCTG
CTACCGAAAT ACCCGAACGT CGATGGCGTG GTGGGGCTGA ATCATTTGTA CGGCTGTGGC
GTGGCGATTA ACGCACCGGC GGCAGTTGTG CCTATTCGTA CCATCCACAA TATTTCGCTG
AACCCTAACT TTGGCGGCGA AGTAATGGTG ATTGGTCTGG GTTGTGAAAA GTTGCAGCCT
GAGCGCCTGC TGACTGGAAC GGATGATGTG CAAGCTATTC CAGTAGAAAG CGCCAGCATT
GTCAGTTTGC AGGATGAAAA GCATGTCGGC TTTCAGTCCA TGGTCGAGGA TATTTTGCAG
GTCGCCGAAC GCCATTTGCA CAAACTGAAT CAACGACAGC GAGAAACCTG TCCGGCTTCA
GAACTGGTTG TCGGCATGCA GTGCGGTGGC AGCGATGCGT TTTCTGGCGT AACGGCAAAC
CCGGCGGTTG GGTATGCGTC TGATCTACTG GTGCGCTGCG GCGCAACGGT GATGTTTTCA
GAAGTCACGG AAGTGCGTGA CGCGATCCAT CTGCTGACAC CACGCGCAGT GAACGAAGAG
GTCGGCAAAC GGCTGCTGGA GGAGATGGAG TGGTACGATA ACTATCTCAA TATGGGAAAA
ACCGACCGCA GCGCCAACCC TTCGCCGGGC AACAAGAAAG GCGGTCTGGC AAATGTGGTG
GAGAAAGCGC TCGGCTCCAT TGCTAAATCG GGTAAAAGTG CAATTGTTGA AGTGCTGTCG
CCCGGCCAAC GCCCGACTAA ACGCGGATTA ATTTACGCCG CGACGCCAGC CAGCGATTTT
GTCTGTGGCA CGCAACAGGT GGCTTCGGGT ATCACTGTGC AAGTGTTTAC GACCGGTCGT
GGTACGCCGT ACGGCCTGAT GGCGGTACCG GTCATTAAAA TGGCGACCCG CACCGAGCTG
GCGAACCGCT GGTTTGATTT AATGGATATT AACGCGGGCA CTATCGCTAC CGGCGAAGAA
ACCATTGAAG AAGTGGGCTG GAAGTTGTTC CACTTTATTC TCGACGTCGC CAGCGGGAAG
AAGAAAACTT TCTCGGATCA ATGGGGACTG CATAACCAGC TGGCGGTGTT TAACCCAGCA
CCGGTGACCT GA
|
|---|
| Protein sequence | MANIEIRQET PTAFYIKVHD TDNVAIIVND NGLKAGTRFP DGLELIEHIP QGHKVALLDI
PANGEIIRYG EVIGYAVRAI PRGSWIDESM VVLPEAPPLH TLPLATKVPE PLPPLEGYTF
EGYRNADGSV GTKNLLGITT SVHCVAGVVD YVVKIIERDL LPKYPNVDGV VGLNHLYGCG
VAINAPAAVV PIRTIHNISL NPNFGGEVMV IGLGCEKLQP ERLLTGTDDV QAIPVESASI
VSLQDEKHVG FQSMVEDILQ VAERHLHKLN QRQRETCPAS ELVVGMQCGG SDAFSGVTAN
PAVGYASDLL VRCGATVMFS EVTEVRDAIH LLTPRAVNEE VGKRLLEEME WYDNYLNMGK
TDRSANPSPG NKKGGLANVV EKALGSIAKS GKSAIVEVLS PGQRPTKRGL IYAATPASDF
VCGTQQVASG ITVQVFTTGR GTPYGLMAVP VIKMATRTEL ANRWFDLMDI NAGTIATGEE
TIEEVGWKLF HFILDVASGK KKTFSDQWGL HNQLAVFNPA PVT
|
|---|
| |