Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_3421 |
Symbol | garL |
ID | 6147417 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 3502623 |
End bp | 3503393 |
Gene Length | 771 bp |
Protein Length | 256 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 641618250 |
Product | alpha-dehydro-beta-deoxy-D-glucarate aldolase |
Protein accession | YP_001745399 |
Protein GI | 170682298 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3836] 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase |
TIGRFAM ID | [TIGR03239] 2-dehydro-3-deoxyglucarate aldolase |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 60 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATAACG ATGTTTTCCC GAATAAATTC AAAGCCGCAC TGGCTGCGAA ACAGGTACAA ATTGGTTGCT GGTCAGCACT CTCTAACCCG ATTAGCACTG AAGTCCTTGG TTTGGCTGGG TTTGACTGGC TGGTGCTGGA TGGCGAACAT GCGCCAAACG ATATCTCCAC GTTTATTCCG CAGTTAATGG CCCTGAAAGG CAGCGCCAGC GCGCCAGTAG TGCGAGTGCC GACCAACGAG CCGGTAATTA TTAAGCGTCT TCTGGATATC GGTTTCTATA ACTTCCTGAT TCCTTTTGTA GAAACAAAAG AGGAAGCAGA GCAGGCGGTG GCATCAACCC GTTACCCACC GGAAGGCATT CGCGGCGTCT CCGTTTCTCA CCGCGCCAAT ATGTTTGGCA CCGTGGCGGA TTATTTCGCT CAGTCGAACA AGAACATCAC CATTCTGGTC CAGATAGAAA GTCAGCAGGG CGTAGATAAC GTCGATGCCA TTGCCGCTAC CGAAGGCGTA GACGGTATCT TCGTCGGCCC CAGCGATCTG GCTGCGGCAT TAGGCCATCT CGGCAATGCC TCGCACCCGG ATGTACAAAA AGCAATCCAG CATATTTTTA ACCGTGCCAG TGCGCACGGC AAACCCAGCG GTATCCTCGC ACCGGTCGAA GCCGATGCGC GTCGTTATCT GGAATGGGGG GCGACGTTTG TGGCTGTCGG CAGCGATCTC GGCGTCTTCC GCTCTGCCAC TCAGAAACTG GCTGATACCT TTAAAAAATA A
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Protein sequence | MNNDVFPNKF KAALAAKQVQ IGCWSALSNP ISTEVLGLAG FDWLVLDGEH APNDISTFIP QLMALKGSAS APVVRVPTNE PVIIKRLLDI GFYNFLIPFV ETKEEAEQAV ASTRYPPEGI RGVSVSHRAN MFGTVADYFA QSNKNITILV QIESQQGVDN VDAIAATEGV DGIFVGPSDL AAALGHLGNA SHPDVQKAIQ HIFNRASAHG KPSGILAPVE ADARRYLEWG ATFVAVGSDL GVFRSATQKL ADTFKK
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