| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3307 |
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| Symbol | |
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| ID | 6147460 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 3382660 |
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| End bp | 3383964 |
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| Gene Length | 1305 bp |
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| Protein Length | 434 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641618136 |
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| Product | TRAP transporter, DctM subunit |
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| Protein accession | YP_001745286 |
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| Protein GI | 170682721 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.512903 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.00482175 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGACTTTG AATATATCTA CCCCGTCTTA ATTTTATTTG GCAGTTTTGC CGTCATGCTG
GCAATCGGTG TGCCAATTAC TTTTGCGATT GGTCTTTCTT CGCTGTTATC TATTATTACT
GCCTTACCAC CCGATGCCGC CATTTCTGTG ATTTCGCAAA AGATGACTGT GGGGCTGGAT
GGCTTTACGC TATTAGCCAT TCCCTTCTTC GTGTTAGCCG GAAACATTAT GAATACCGGT
GGTATAGCCA GACGACTGGT TAACCTGGCG CAAGCATTAG TTGGGCGTCT TCCTGGCTCA
CTGGCTCATT GTAATATCCT CGCGAATACG CTGTTTGGTG CGATTTCAGG TTCAGCCGTT
GCGTCAGCCG CCGCGGTAGG TGGAATTATG TCACCACTGC AAGAAAAAGA GGGCTATGAT
CCGGCGTTTT CAGCAGCGGT TAATATTGCC TCTGCCCCCA TTGGCCTGAT GATCCCACCG
AGCAATGTGT TGATTGTTTA TTCCCTCGCC AGTGGCGGGA CTTCTGTTGC TGCGTTGTTC
TTAGCCGGAT ACTTGCCAGG CATTCTCACC GCTGCTGCTT TAATGTTTGT GGCGGCACTT
TATGCGCGAC GTAACCATTA TCCGGTGGCC GAACGTATCA ATTTTCATCA ATTTTTGCAG
GTATTCCGCG AATCAATTCC CAGCCTGATG CTTATTTTTA TCATTATTGG CGGTATTATC
GCAGGGGTAT TCACGCCCAC GGAAGCATCG GCAATTGCGG TAATTTATAG TTTAGCCCTG
GCGATGATTT ACCGGGAAAT CACTTTTAAG AAGCTCAATG ATATTCTGTT AGATTCGGTA
GTAACCAGTT CAATTGTTCT GTTACTGGTA GGCTGCTCGA TGGGGATGTC ATGGGCCATG
ACGAATGCTG ATGTTCCTGA GTTGATCAAC GAACTGATTA CCAGTGTTTC GGATAACAAA
TGGGTTATTC TGTTTATCAT CAATATCATT CTGTTGATCG TCGGTACCTT TATGGATATC
ACACCGGCGA TCCTGATATT TACGCCTATT TTCCTGCCGA TCGCTCAGCA TCTGGGAATA
GATCCCATCC ACTTCGGTAT TATTATGGTG TTCAACTTGA CCATTGGCCT TTGTACACCA
CCCGTTGGCA CCATTCTGTT TGTTGGTTGC AGCATTGGTA AGGTCAGTAT CGACAGGGCA
ATAAAACCAT TACTGCCGAT GTTTCTGGCA TTGTTTGTAG TAATGGCAAT TATTTGTTAT
TTCCCGCAGC TTAGTCTGAT GCTGCCAGGA TTATTTTCGA CCTGA
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| Protein sequence | MDFEYIYPVL ILFGSFAVML AIGVPITFAI GLSSLLSIIT ALPPDAAISV ISQKMTVGLD
GFTLLAIPFF VLAGNIMNTG GIARRLVNLA QALVGRLPGS LAHCNILANT LFGAISGSAV
ASAAAVGGIM SPLQEKEGYD PAFSAAVNIA SAPIGLMIPP SNVLIVYSLA SGGTSVAALF
LAGYLPGILT AAALMFVAAL YARRNHYPVA ERINFHQFLQ VFRESIPSLM LIFIIIGGII
AGVFTPTEAS AIAVIYSLAL AMIYREITFK KLNDILLDSV VTSSIVLLLV GCSMGMSWAM
TNADVPELIN ELITSVSDNK WVILFIINII LLIVGTFMDI TPAILIFTPI FLPIAQHLGI
DPIHFGIIMV FNLTIGLCTP PVGTILFVGC SIGKVSIDRA IKPLLPMFLA LFVVMAIICY
FPQLSLMLPG LFST
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