| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3305 |
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| Symbol | |
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| ID | 6144329 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 3381142 |
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| End bp | 3382125 |
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| Gene Length | 984 bp |
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| Protein Length | 327 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641618135 |
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| Product | TRAP transporter solute receptor DctP family protein |
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| Protein accession | YP_001745285 |
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| Protein GI | 170683750 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.829241 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.0101989 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGCAC TTCGTCCTCT GACGGCATCG CTTATGCTGT TAACCAGTTG TTTATTAATA
TCTAATACCA CACTGGCAAA AACAACATTA AAACTGAGTC ATAATCAGGA TAAAAGCCAT
GCTGTCCATA AAGCATTAAG CTATTTAGCG GATAAAACCA AAGAGTATTC TAATGGTGAA
TTAGTTATTC GCATTTACCC AAATGCAACA TTAGGTAATG AGCGTGAATC ACTGGAATTA
ATGAACTCCG GTGCATTACA GATGGTTAAG GTTAATGCCG CATCACTAGA ATCATTTGCT
CCAGATTACA GCCTTTTCAG TCTGCCGTTC TTATTCCGCG ACCGTGATCA CTATTATCGT
GTTCTGCAAA GTGATTTAGG TAAAAAAATA CTTAATTCAT CAGAAAGCAA AGGTTTTGTT
GGTATTACGT ACTATGACGG CGGTGCGAGA AGTTTTTATT CCAATAAACC GATTACAAAA
CCTGAAGATT TAGCGGGAAT GAAAATCAGG GTTCAACAAA GCCCCAGCGC CATTGCAATG
ATGAAAGCAC TCGGTGGTGT CGCTACCCCG ATGGCGCAAG GCGAACTCTA CACCGCACTT
CAGCAAGGAG TGGTTGATGG CGGAGAGAAC AATACCGTTG TCTATTCCGA TATGCGTCAC
GCCGAAGTCG CAAAAGTCTA TTCACGTGAT GAACACACCA TGGTACCTGA TGTGTTAATT
ATCAGCACCA ACGTGTTGAA TAAACTTGGT GATAAAGAGC GCACGGCATT ATTAAAAGCA
GCCGATGAGT CCATGATGCA GATGAAGGAC GTCATCTGGC CTGCGGCTGA AAAAGAAGCC
TACGACAAAA TGAAAGGGAT GAACGCAACA GTTGTTGATG TTGATAAATC CGCTTTCAAA
GAACGCGTCA AACCGTTATA CGATGAATTC AAGGCGAAAG ATGCACAATC AGCCAAAAAC
CTTGAGCTAG TAGAAAGTAT GTAA
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| Protein sequence | MKALRPLTAS LMLLTSCLLI SNTTLAKTTL KLSHNQDKSH AVHKALSYLA DKTKEYSNGE
LVIRIYPNAT LGNERESLEL MNSGALQMVK VNAASLESFA PDYSLFSLPF LFRDRDHYYR
VLQSDLGKKI LNSSESKGFV GITYYDGGAR SFYSNKPITK PEDLAGMKIR VQQSPSAIAM
MKALGGVATP MAQGELYTAL QQGVVDGGEN NTVVYSDMRH AEVAKVYSRD EHTMVPDVLI
ISTNVLNKLG DKERTALLKA ADESMMQMKD VIWPAAEKEA YDKMKGMNAT VVDVDKSAFK
ERVKPLYDEF KAKDAQSAKN LELVESM
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