| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3268 |
|---|
| Symbol | |
|---|
| ID | 6146758 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 3346437 |
|---|
| End bp | 3347786 |
|---|
| Gene Length | 1350 bp |
|---|
| Protein Length | 449 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641618098 |
|---|
| Product | putative polysaccharide biosynthesis protein |
|---|
| Protein accession | YP_001745248 |
|---|
| Protein GI | 170681924 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2244] Membrane protein involved in the export of O-antigen and teichoic acid |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.809539 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 68 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGCGGGTT TTAACATCAA ACATTGGTTT GCAGATGGCG CGTTTCGCAC CATTATTCGC
AATAGCGCCT GGTTAGGCTC CAGTAATGTC GTGAGCGCTT TACTGGGTCT GTTGGCGCTC
TCGTGTGCCG GTAAAGGGAT GACGCCCGCC ATGTTTGGCG TACTGGTGAT TGTGCAATCG
TACGCCAAGT CGATCAGCGA TTTTATTAAG TTTCAGACAT GGCAGTTGGT GGTGCAGTAC
GGAACGCCAG CCTTGACCAA CAATAATCCG CAGCAATTTC GCAATGTCGT CTCATTTTCC
TTCTCGCTGG ATATCGTCAG CGGCGCGGTG GCGATTGTCG GCGGCATTGC CTTACTCCCT
TTTCTTTCCC ATTCATTAGG TCTGGATGAC CAAAGCTTTT GGCTGGCAGC GCTGTATTGC
ACGCTCATTC CTTCAATGGC TTCCTCCACG CCGACCGGCA TTCTGCGTGC GGTAGATCGC
TTCGATCTAA TTGCTGTACA GCAAGCGACG AAACCTTTTC TGCGTGCAGC GGGGAGCGTC
GTAGCCTGGT ATTTTGACTT TGGTTTTGCG GGTTTTGTTA TTGCCTGGTA CGTGTCGAAT
CTGGTTGGCG GCACCATGTA CTGGTGGTTT GCCGCGCGCG AATTACGCCG CAGAAATATC
CATAACGCCT TCAAATTGAA TCTGTTTGAG TCTGCCCGAC ACATTAAAGG CGCGTGGAGT
TTTGTCTGGT CAACCAACAT TGCCCACTCC ATCTGGTCGG CGCGTAACTC GTGCAGCACA
GTGCTGGTGG GGATCGTGTT AGGACCCGCT GCCGCCGGGT TATTTAAAAT CGCCATGACA
TTCTTCGACG CCGCCGGAAC GCCAGCGGGT TTACTGGGCA AAAGTTTTTA CCCAGAGGTG
ATGCGTTTAG ATCCGCGCAC CACCAGACCG TGGTTGTTAG GCGTGAAGTC AGGTTTACTG
GCGGGCGGAA TCGGTATTCT GGTGGCGCTC GCGGTGTTGA TTGTCGGCAA GCCGCTCATT
TCGCTGGTGT TTGGCGTTAA GTATCTCGAA GCGTATGACC TGATTCAGGT GATGCTGGGC
GCAATTGTGA TCTCGATGCT GGGCTTCCCT CAGGAGTCAT TGCTATTGAT GGCGGGAAAA
CAGCGCGCTT TTCTCGTGGC GCAAACCATC GCCTCAATCG GCTACATCGT ATTGCTGTTC
ATGTTCTGTC ATCTGTTTGG CGTGCTGGGA GCAGCGTTTG CTTATTTCGG CGGTCAATGT
CTGGATGTGG TGCTCTCGCT AATTCCAACC TTAAGGGCAT TTTTTCAGCG CCATTCCTTG
CTTTATAACG CAGCCGGAGA GAAATCCTGA
|
|---|
| Protein sequence | MAGFNIKHWF ADGAFRTIIR NSAWLGSSNV VSALLGLLAL SCAGKGMTPA MFGVLVIVQS
YAKSISDFIK FQTWQLVVQY GTPALTNNNP QQFRNVVSFS FSLDIVSGAV AIVGGIALLP
FLSHSLGLDD QSFWLAALYC TLIPSMASST PTGILRAVDR FDLIAVQQAT KPFLRAAGSV
VAWYFDFGFA GFVIAWYVSN LVGGTMYWWF AARELRRRNI HNAFKLNLFE SARHIKGAWS
FVWSTNIAHS IWSARNSCST VLVGIVLGPA AAGLFKIAMT FFDAAGTPAG LLGKSFYPEV
MRLDPRTTRP WLLGVKSGLL AGGIGILVAL AVLIVGKPLI SLVFGVKYLE AYDLIQVMLG
AIVISMLGFP QESLLLMAGK QRAFLVAQTI ASIGYIVLLF MFCHLFGVLG AAFAYFGGQC
LDVVLSLIPT LRAFFQRHSL LYNAAGEKS
|
|---|
| |