| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3247 |
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| Symbol | gspD |
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| ID | 6142627 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 3318117 |
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| End bp | 3320177 |
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| Gene Length | 2061 bp |
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| Protein Length | 686 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641618077 |
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| Product | general secretion pathway protein GspD |
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| Protein accession | YP_001745227 |
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| Protein GI | 170681179 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTTTTGGC GTGATATGAC GTTGTCGGTC TGGCGTAAGA AGACAACTGG CCTCAAAACA
AAAAAGCGTT TACTGCCGCT GGTGCTGGCA GCGGCATTAT GCAGTTCACC GGTCTGGGCG
GAAGAAGCCA CTTTCACCGC TAATTTTAAA GATACCGACC TGAAATCGTT CATCGAAACC
GTCGGCGCTA ACCTTAATAA AACCATCATT ATGGGGCCGG GCGTTCAGGG GAAAGTGAGT
ATTCGCACTA TGACTCCACT CAATGAACGC CAGTATTACC AGCTATTCCT TAACCTGCTG
GAAGCGCAGG GGTATGCCGT CGTACCGATG GAAAACGACG TGCTGAAGGT GGTGAAATCA
AGCGCCGCGA AAGTCGAGCC GCTGCCGCTG GTCGGTGAAG GCAGCGACAA CTACGCGGGC
GATGAAATGG TCACCAAAGT CGTGCCGGTA CGTAATGTGT CGGTACGCGA GCTGGCACCG
ATTCTGCGCC AGATGATTGA CAGCGCAGGC TCAGGCAACG TTGTTAATTA CGATCCCTCC
AACGTGATTA TGCTCACCGG ACGCGCCTCA GTCGTGGAGC GACTGACGGA AGTGATCCAG
CGCGTGGATC ACGCAGGAAA CCGCACCGAA GAGGTGATCC CGCTGGATAA CGCCTCAGCC
TCGGAAATTG CCCGCGTGCT GGAAAGCCTG ACCAAAAACA GCGGCGAGAA CCAGCCAGCA
ACGCTGAAAT CTCAAATTGT CGCCGATGAA CGCACCAACA GCGTGATTGT CAGTGGTGAC
CCCGCCACGC GAGACAAAAT GCGCCGTCTG ATCCGTCGGC TGGATTCAGA AATGGAGCGC
AGAGGCAACA GCCAGGTGTT CTATCTCAAA TACAGCAAAG CCGAAGATCT GGTCGATGTG
CTGAAGCAGG TCAGCGGTAC GCTCACGGCG GCTAAAGAAG AGGCGGAAGG CACGGTTGGT
AGCGGGCGTG AGGTTGTCTC CATCGCCGCC AGCAAACACA GTAATGCCCT GATTGTTACT
GCGCCGCAGG ACATTATGCA GTCGCTGCAA AGCGTGATTG AACAACTGGA TATTCGCCGT
GCTCAGGTGC ATGTCGAGGC GTTAATCGTG GAAGTTGCCG AAGGCAGCAA TATCAACTTC
GGCGTGCAGT GGGGGTCAAA AGATGCCGGA TTAATGCAGT TTGCCAACGG TACGCAAATC
CCTATTGGTA CGCTGGGGGC AGCGATTTCT GCAGCCAAGC CGCAGAAAGG TTCCACGGTG
ATCAGCGAAA ACGGTGCTAC CACCATAAAT CCGGATACTA ACGGCGATCT CTCCACGCTC
GCTCAGCTTC TTTCTGGCTT TAGCGGTACG GCGGTTGGCG TGGTGAAAGG CGACTGGATG
GCGCTGGTAC AGGCGGTCAA AAACGACTCC AGCTCGAACG TGCTCTCCAC GCCGAGTATC
ACCACGCTGG ACAACCAGGA AGCCTTCTTC ATGGTGGGCC AGGACGTTCC GGTATTAACT
GGATCTACCG TTGGCTCCAA TAACAGCAAT CCTTTCAATA CGGTAGAGAG GAAAAAAGTC
GGCATCATGC TGAAAGTCAC GCCGCAGATT AACGAAGGTA ACGCGGTACA GATGGTGATT
GAGCAGGAAG TCTCGAAAGT GGAAGGGCAG ACCAGCCTCG ATGTCGTGTT TGGCGAGCGC
AAACTGAAAA CCACCGTGCT GGCTAACGAT GGTGAGCTGA TCGTGCTTGG CGGTCTGATG
GACGACCAGG CGGGAGAAAG CGTGGCGAAA GTGCCGCTGC TGGGTGATAT CCCGTTGATT
GGTAACCTGT TTAAATCGAC GGCGGATAAA AAAGAAAAAC GTAACCTGAT GGTGTTTATC
CGCCCGACCA TTTTGCGTGA CGGTATGGCG GCAGACGGCG TGTCGCAGCG CAAATATAAC
TACATGCGCG CTGAGCAAAT CTACCGCGAT GAGCAAGGCT TAAGCCTGAT GCCGCACACC
GCGCAGCCGA TATTGCCAGC GCAAAATCAG GCCTTACCGC CGGAAGTACG CGCGTTCCTC
AATGCCGGGA GAACGCGTTA A
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| Protein sequence | MFWRDMTLSV WRKKTTGLKT KKRLLPLVLA AALCSSPVWA EEATFTANFK DTDLKSFIET
VGANLNKTII MGPGVQGKVS IRTMTPLNER QYYQLFLNLL EAQGYAVVPM ENDVLKVVKS
SAAKVEPLPL VGEGSDNYAG DEMVTKVVPV RNVSVRELAP ILRQMIDSAG SGNVVNYDPS
NVIMLTGRAS VVERLTEVIQ RVDHAGNRTE EVIPLDNASA SEIARVLESL TKNSGENQPA
TLKSQIVADE RTNSVIVSGD PATRDKMRRL IRRLDSEMER RGNSQVFYLK YSKAEDLVDV
LKQVSGTLTA AKEEAEGTVG SGREVVSIAA SKHSNALIVT APQDIMQSLQ SVIEQLDIRR
AQVHVEALIV EVAEGSNINF GVQWGSKDAG LMQFANGTQI PIGTLGAAIS AAKPQKGSTV
ISENGATTIN PDTNGDLSTL AQLLSGFSGT AVGVVKGDWM ALVQAVKNDS SSNVLSTPSI
TTLDNQEAFF MVGQDVPVLT GSTVGSNNSN PFNTVERKKV GIMLKVTPQI NEGNAVQMVI
EQEVSKVEGQ TSLDVVFGER KLKTTVLAND GELIVLGGLM DDQAGESVAK VPLLGDIPLI
GNLFKSTADK KEKRNLMVFI RPTILRDGMA ADGVSQRKYN YMRAEQIYRD EQGLSLMPHT
AQPILPAQNQ ALPPEVRAFL NAGRTR
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