Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_3243 |
Symbol | gspH |
ID | 6143893 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 3314362 |
End bp | 3314925 |
Gene Length | 564 bp |
Protein Length | 187 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 641618073 |
Product | general secretion pathway protein GspH |
Protein accession | YP_001745223 |
Protein GI | 170681274 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR01708] general secretion pathway protein H [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 0.793793 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCCTGAAC GCGGATTCAC ACTTCTGGAA ATCATGCTGG TGATTTTCCT TATCGGCCTT GCCAGTGCGG GCGTGGTACA GACGTTTGCG ACCGCTTCAG AGCCGCCTGC GAAAAAAGCG GCGCAGGATT TTCTGACTCG CTTTGCGCAG TTTAAGGACA GGGCAGTGAT CGAAGGGCAA ACACTCGGTG TGCTAATCGA CCCGCCAGGT TACCAGTTTA TGCAGCGTCG TCACGGGCAA TGGTTGCCCG TTTCTGCGAC CCGGTTATCG GCACAGGTTA CGGTGCCGAA ACAGGTGCAG ATGCTGTTAC AACCCGGCAG TGATATCTGG CAGAAGGAAT ATGCGCTGGA GCTGCAGCGT CGTCGCCTGA CGCTGCACGA TATTGAACTG GAGCTGCAAA AAGAGGCGAA AAAGAAGACA CCGCAGATCC GTTTTTCGCC TTTTGAACCT GTCACGCCGT TTACACTACG TTTTTACTCG TCGGCACAAA ACGCGTGTTG GGCGGTAAAG CTGGCGCACG ATGGCGCGTT ATCTCTCAAT CAATGTGATG AGGGGATGCC ATGA
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Protein sequence | MPERGFTLLE IMLVIFLIGL ASAGVVQTFA TASEPPAKKA AQDFLTRFAQ FKDRAVIEGQ TLGVLIDPPG YQFMQRRHGQ WLPVSATRLS AQVTVPKQVQ MLLQPGSDIW QKEYALELQR RRLTLHDIEL ELQKEAKKKT PQIRFSPFEP VTPFTLRFYS SAQNACWAVK LAHDGALSLN QCDEGMP
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