Gene EcSMS35_3243 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcSMS35_3243 
SymbolgspH 
ID6143893 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli SMS-3-5 
KingdomBacteria 
Replicon accessionNC_010498 
Strand
Start bp3314362 
End bp3314925 
Gene Length564 bp 
Protein Length187 aa 
Translation table11 
GC content54% 
IMG OID641618073 
Productgeneral secretion pathway protein GspH 
Protein accessionYP_001745223 
Protein GI170681274 
COG category 
COG ID 
TIGRFAM ID[TIGR01708] general secretion pathway protein H
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones48 
Fosmid unclonability p-value0.793793 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCCTGAAC GCGGATTCAC ACTTCTGGAA ATCATGCTGG TGATTTTCCT TATCGGCCTT 
GCCAGTGCGG GCGTGGTACA GACGTTTGCG ACCGCTTCAG AGCCGCCTGC GAAAAAAGCG
GCGCAGGATT TTCTGACTCG CTTTGCGCAG TTTAAGGACA GGGCAGTGAT CGAAGGGCAA
ACACTCGGTG TGCTAATCGA CCCGCCAGGT TACCAGTTTA TGCAGCGTCG TCACGGGCAA
TGGTTGCCCG TTTCTGCGAC CCGGTTATCG GCACAGGTTA CGGTGCCGAA ACAGGTGCAG
ATGCTGTTAC AACCCGGCAG TGATATCTGG CAGAAGGAAT ATGCGCTGGA GCTGCAGCGT
CGTCGCCTGA CGCTGCACGA TATTGAACTG GAGCTGCAAA AAGAGGCGAA AAAGAAGACA
CCGCAGATCC GTTTTTCGCC TTTTGAACCT GTCACGCCGT TTACACTACG TTTTTACTCG
TCGGCACAAA ACGCGTGTTG GGCGGTAAAG CTGGCGCACG ATGGCGCGTT ATCTCTCAAT
CAATGTGATG AGGGGATGCC ATGA
 
Protein sequence
MPERGFTLLE IMLVIFLIGL ASAGVVQTFA TASEPPAKKA AQDFLTRFAQ FKDRAVIEGQ 
TLGVLIDPPG YQFMQRRHGQ WLPVSATRLS AQVTVPKQVQ MLLQPGSDIW QKEYALELQR
RRLTLHDIEL ELQKEAKKKT PQIRFSPFEP VTPFTLRFYS SAQNACWAVK LAHDGALSLN
QCDEGMP