| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3238 |
|---|
| Symbol | gspM |
|---|
| ID | 6147414 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 3310702 |
|---|
| End bp | 3311238 |
|---|
| Gene Length | 537 bp |
|---|
| Protein Length | 178 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641618068 |
|---|
| Product | putative general secretion pathway protein YghD |
|---|
| Protein accession | YP_001745218 |
|---|
| Protein GI | 170682883 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3149] Type II secretory pathway, component PulM |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.310294 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 0.927971 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTACGCG ATAAATTTAT TCACTATTTT CAGCAATGGT GTGAACGCCA GTTAAGCCGT
GGCGAACACT GGCTGACACA ACACCTGGCG GGGCGTTCTC CGCGTGAAAA AGGCATGTTA
CTGGCAGCGG CGGTGTTCCT GTTTAGCGCC GGATATTACG TTCTCATCTG GCAGCCGTTG
AGCGAACGGA TTGAGCAACA GGAGACGATG TTGCAGCAGC TCGTGGCGAT GAACTCCCGG
ATGAAGAACG CCGCGCCGGA TATTATTGCG GCGCGAAAAT CCGCCACGAC AACGCCAGCA
CAGGTATCGC GGGTCATCAG TGACAGCGCT TCCGCGCACT CGGTGGTCAT CAAACGGATT
GCCGAGCGTG GGGAGAATAT TCAAGTCTGG ATAGAACCTG TGGTGTTTAA TGACCTGCTG
AACTGGTTAA AGGCACTGGA TGAAAAATAT GCGCTGCGGG TGATACAAAT TGATGTCAGC
GCAGGTGAGA AGCTTGGGAT GGTGAATGTG CAGCGACTGG AGTTTGGACG GGGGTAG
|
|---|
| Protein sequence | MLRDKFIHYF QQWCERQLSR GEHWLTQHLA GRSPREKGML LAAAVFLFSA GYYVLIWQPL
SERIEQQETM LQQLVAMNSR MKNAAPDIIA ARKSATTTPA QVSRVISDSA SAHSVVIKRI
AERGENIQVW IEPVVFNDLL NWLKALDEKY ALRVIQIDVS AGEKLGMVNV QRLEFGRG
|
|---|
| |