| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3221 |
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| Symbol | kpsD |
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| ID | 6145112 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 3292516 |
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| End bp | 3294192 |
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| Gene Length | 1677 bp |
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| Protein Length | 558 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641618054 |
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| Product | polysialic acid capsule transport protein KpsD |
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| Protein accession | YP_001745204 |
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| Protein GI | 170681559 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.364488 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 56 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTAT TTAAATCAAT TTTACTGATT GCCGCCTGTC ACGCGGCGCA GGCCAGCGCG
GCCATTGATA TTAACGCTGA CCCAAACCTG ACAGGAGCCG CGCCGCTTAC CGGTATTCTG
AACGGGCAAC AGTCGGATAC GCAAAACATG AGCGGCTTCG ACAATACCCC GCCGCCCGCA
CCGCCGGTGG TCATGAGCCG TATGTTTGGT GCTCAACTTT TCAACGGCAC CAGCGCGGAT
AGCGGTGCGA CGGTAGGATT CAACCCTGAT TATATTCTGA ATCCGGGCGA TAGCATTCAG
GTCCGCTTAT GGGGTGCGTT CACCTTTGAT GGTGCGTTAC AGATTGATCC TAAAGGTAAT
ATTTTCCTGC CGAACGTTGG TCCGGTGAAA GTTGCTGGCG TCAGTAATAG TCAGTTAAAT
GCCCTGGTCA CATCCAAAGT GAAGGAAGTA TACCAGTCCA ACGTCAACGT CTACGCCTCC
TTATTACAGG CGCAGCCAGT AAAAGTGTAC GTGACCGGAT TTGTGCGTAA TCCTGGTCTG
TATGGCGGTG TGACGTCTGA TTCGTTACTC AATTATCTGA TCAAGGCTGG CGGCGTTGAT
CCAGAGCGCG GAAGTTACGT TGATATTGTG GTCAAGCGCG GTAACCGCGT GCGCTCCAAC
GTCAACCTGT ACGACTTCCT GCTGAACGGC AAACTGGGGC TTTCGCAGTT CGCCGATGGT
GACACCATCA TCGTCGGGCC GCGTCAGCAT ACTTTCAGCG TTCAGGGCGA TGTCTTTAAC
AGCTACGACT TTGAGTTCCG CGAAAGCAGC ATTCCCGTAA CGGAAGCGTT GAGCTGGGCG
CGCCCTAAGC CTGGCGCGAC TCACATTACG ATTATGCGTA AACAGGGGCT GCAAAAACGC
AGCGAATACT ATCCGATCAG TTCTGCGCCA GGCCGTATGT TGCAAAATGG CGATACCTTA
ATCGTGAGCA CTGACCGCTA TGCCGGCACC ATTCAGGTGC GGGTTGAAGG CGCACACTCC
GGTGAACATG CCATGGTACT GCCTTATGGT TCCACTATGC GTGCGGTTCT GGAAAAAGTC
CGCCCGAACA GCATGTCGCA GATGAACGCG GTTCAGCTTT ATCGCCCATC AGTAGCTCAG
CGTCAGAAAG AGATGCTGAA TCTCTCGCTG CAAAAACTGG AGGAAGCATC ACTTTCTGCC
CAGTCCTCCA CCAAAGAAGA AGCCAGCCTG CGAATGCAGG AAGCGCAACT GATCAGCCGC
TTTGTGGCGA AAGCGCGCAC CGTGGTTCCG AAAGGTGAAG TGATCCTCAA CGAATCCAAT
ATTGATTCTG TTCTGCTTGA AGATGGCGAC GTCATCAATA TTCCGGAGAA AACATCGCTG
GTTATGGTTC ATGGCGAAGT GCTGTTCCCG AACGCGGTGA GCTGGCAGAA GGGTATGACC
ACCGAGGATT ACATCGAGAA ATGTGGTGGC CTGACGCAAA AATCGGGTAA CGCCAGAATT
ATCGTCATTC GTCAGAACGG TGCGGCAGTC AACGCTGAAG ATGTGGATTC ACTCAAACCG
GGCGATGAGA TTATGGTTCT GCCGAAATAT GAATCGAAAA ACATTGAAGT TACCCGTGGT
ATTTCCACCA TCCTCTATCA GCTGGCGGTG GGTGCAAAAG TGATTCTGTC TTTGTAA
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| Protein sequence | MKLFKSILLI AACHAAQASA AIDINADPNL TGAAPLTGIL NGQQSDTQNM SGFDNTPPPA
PPVVMSRMFG AQLFNGTSAD SGATVGFNPD YILNPGDSIQ VRLWGAFTFD GALQIDPKGN
IFLPNVGPVK VAGVSNSQLN ALVTSKVKEV YQSNVNVYAS LLQAQPVKVY VTGFVRNPGL
YGGVTSDSLL NYLIKAGGVD PERGSYVDIV VKRGNRVRSN VNLYDFLLNG KLGLSQFADG
DTIIVGPRQH TFSVQGDVFN SYDFEFRESS IPVTEALSWA RPKPGATHIT IMRKQGLQKR
SEYYPISSAP GRMLQNGDTL IVSTDRYAGT IQVRVEGAHS GEHAMVLPYG STMRAVLEKV
RPNSMSQMNA VQLYRPSVAQ RQKEMLNLSL QKLEEASLSA QSSTKEEASL RMQEAQLISR
FVAKARTVVP KGEVILNESN IDSVLLEDGD VINIPEKTSL VMVHGEVLFP NAVSWQKGMT
TEDYIEKCGG LTQKSGNARI IVIRQNGAAV NAEDVDSLKP GDEIMVLPKY ESKNIEVTRG
ISTILYQLAV GAKVILSL
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