| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3126 |
|---|
| Symbol | |
|---|
| ID | 6145603 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | + |
|---|
| Start bp | 3211704 |
|---|
| End bp | 3213278 |
|---|
| Gene Length | 1575 bp |
|---|
| Protein Length | 524 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 641617990 |
|---|
| Product | IS66 family transposase orfB |
|---|
| Protein accession | YP_001745140 |
|---|
| Protein GI | 170683550 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3436] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACACCT CACTTGCTCA TGAGAACGCC CGCCTGCGGG CACTGTTGCA GACGCAACAG
GACACCATCC GCCAGATGGC TGAATACAAC CGCCTGCTCT CACAGAGGGT GGCGGCTTAT
GCTTCTGAAA TCAACCGGCT GAAGGCGCTG GTTGCGAAAC TGCAACGTAT GCAGTTCGGT
AAAAGCTCAG AAAAACTTCG TGCAAAAACC GAACGGCAGA TACAGGAAGC ACAGGAGCGA
ATCAGCGCAC TTCAGGAAGA AATGGCGGAA ACGCTGGGTG AGCAATATGA CCCGGTACTG
CCATCCGCCG CCCTGCGTCA GTCTTCAGCC TGTAAACAGT TACCGGCCTC ACTTCCCCGT
GAAACCCGGG TTATCCGGCC GGAAGAGGAA TGCTGTCCTG CCTGTGGTGG TGAACTCAGT
TCTCTGGGAT GTGATGTGTC AGAGCAACTG GAGCTTATCA GCAGCGCCTT TAAGGTTATC
GAAACACAAC GTCCGAAACA GGCCTGTTGC CGGTGCGACC ATATCGTGCA GGCACCAGTA
CCTTCAAAAC CCATTGCACG CAGTTATGCC GGAGCGGGGC TTCTGGCCCA TGTTGTCACC
GGGAAATATG CAGACCATCT GCCGTTATAC CGCCAGTCAG AAATATACCG TCGTCAGGGA
GTGGAGCTGA GCCGTGCCAC ACTGGGGCGC TGGACAGGTG CTGTTGCTGA ACTGCTGGAG
CCGCTGTATG ACGTCCTGCG CCAGTATGTG CTGATGCCCG GTAAAGTCCA TGCTGATGAT
ATCCCCGTCC CGGTCCAGGA GCCGGGCAGC GGTAAAACCC GGACAGCCCG GCTGTGGGTC
TACGTCCGTG ATGACCGTAA CGCCGGTTCA CAGATGCCCC CGGCGGTCTG GTTCGCGTAC
AGTCCGGACC GGAAAGGTAT CCATCCACAA AATCACCTGG CCGGTTACAG CGGTGTGCTT
CAGGCCGATG CTTACGGTGG TTACCGGGCG TTATACGAAT CCGGCAGAAT AACGGAAGCC
GCGTGTATGG CTCATGCCCG GAGAAAAATC CACGATGTGC ATGCAAGAGC GCCCACCTAC
ATCACCACGG AAGCCCTGCA GCGTATCGGT GAACTGTATG CCATCGAGGC AGAGGTCCGG
GGCTGTTCAG CAGAACAGCG TCTGGCGGCA AGAAAAGCCA GAGCCGCGCC ACTGATGCAG
TCACTGTATG ACTGGATACA GCAACAGATG AAAACACTGT CGCGTCACTC AGATACGGCA
AAAGCGTTCG CATACCTGCT GAAACAGTGG GATGCACTGA ACGTGTACTG CAGTAATGGC
TGGGTGGAAA TCGACAACAA CATCGCAGAG AACGCCTTAC GGGGAGTGGC CGTAGGCCGG
AAAAACTGGA TGTTCGCGGG TTCCGACAGC GGTGGTGAAC ATGCGGCGGT GTTGTACTCG
CTGATCGGCA CATGCCGTCT GAACAATGTG GAGCCAGAAA AGTGGCTGCG TTACGTCATT
GAACATATCC AGGACTGGCC GGCAAACCGG GTACGCGATC TGTTGCCCTG GAAAGTTGAT
CTGAGCTCTC AGTAA
|
|---|
| Protein sequence | MDTSLAHENA RLRALLQTQQ DTIRQMAEYN RLLSQRVAAY ASEINRLKAL VAKLQRMQFG
KSSEKLRAKT ERQIQEAQER ISALQEEMAE TLGEQYDPVL PSAALRQSSA CKQLPASLPR
ETRVIRPEEE CCPACGGELS SLGCDVSEQL ELISSAFKVI ETQRPKQACC RCDHIVQAPV
PSKPIARSYA GAGLLAHVVT GKYADHLPLY RQSEIYRRQG VELSRATLGR WTGAVAELLE
PLYDVLRQYV LMPGKVHADD IPVPVQEPGS GKTRTARLWV YVRDDRNAGS QMPPAVWFAY
SPDRKGIHPQ NHLAGYSGVL QADAYGGYRA LYESGRITEA ACMAHARRKI HDVHARAPTY
ITTEALQRIG ELYAIEAEVR GCSAEQRLAA RKARAAPLMQ SLYDWIQQQM KTLSRHSDTA
KAFAYLLKQW DALNVYCSNG WVEIDNNIAE NALRGVAVGR KNWMFAGSDS GGEHAAVLYS
LIGTCRLNNV EPEKWLRYVI EHIQDWPANR VRDLLPWKVD LSSQ
|
|---|
| |