| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3114 |
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| Symbol | rafA |
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| ID | 6146988 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 3199851 |
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| End bp | 3201977 |
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| Gene Length | 2127 bp |
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| Protein Length | 708 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641617981 |
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| Product | alpha-galactosidase |
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| Protein accession | YP_001745131 |
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| Protein GI | 170682126 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3345] Alpha-galactosidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.024409 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTTCAA AGTACTGCAG ACTGAGCAGT CCTCGCTCTG ATTTAATTAT TAAAACCCGT
CCACATGCAG AAATTATCTG GTGGGGCTCT GCACTGAAAC ATTTCTCACC GGATGACTGT
GCCAGCCTGG AAAGACCGGT TGCGAATGGT CGTCTGGATA TTGATACGCC ACTAACACTG
ATGGCTGAAA ATGCCCTGGG ACTTTTTAGC TCTCCGGGAC TGGAAGGACA CAGGAATGGG
CTGGATGCAT CTCCTGTTTT TTATACAGTT GACGTGGAAC ATACCGAAAA CACTCTGAGA
CTTACCAGTG AAGATTCGGT AGCCGGCCTG CGTCTGGTCA GCGAGCTGGT GATGACGCCA
TCAGGAATTC TGAAAGTTCG TCATGCACTG ACCAACCTCA GAGAGGGGGA CTGGCAGATA
AATCGTTTCG CCATCACTTT ACCTTTAGCG GAACGTGCGG AAGAAGTCAT GGCTTTTCAC
GGACGCTGGA CTCGTGAATT TCAGCCGCAC AGGGTACGTC TCACTCATGA TGCTTTTGTT
CTGGAAAATC GCAGAGGGCG GACATCTCAT GAGCATTTTC CGGCGCTGAT TGTCGGCACG
CCAGGCTTCT CGGAACAACA GGGAGAGGTG TGGGCTGTGC ATCTGGGGTG GAGTGGAAAT
CACCGCATGA GATGTGAGGC AAAAACTGAC GGCAGGCGTT ACGTTCAGGC TGAGGCTCTG
TGGATGCCGG GTGAGAAGGC TCTCAGGAAG AATGAAACCC TGTACACCCC GTGGCTATAT
GCCTGCCACT CTGCGGATGG CCTGAATGGA ATGAGTCAGC AATACCATCG TTTTTTGCGT
GATGAAATTA TCCGTTTCCC TGAGCAAAAA CCCCGCCCTG TACATCTCAA TACCTGGGAA
GGTATTTATT TCAATCACAA TCCTGATTAC ATCATGCAGA TGGCTGAGCG TGCAGCAGCA
CTGGGCGTTG AACGTTTCAT TATTGATGAT GGCTGGTTTA AAGGACGTAA CGATGACCGC
GCGGCTCTGG GCGACTGGTA TACCGATGAA CAGAAATACC CGAACGGGCT GATGCCGGTT
ATTAAACATG TGAAATCTCT CGGTATGGAA TTTGGCATAT GGGTTGAGCC GGAAATGATT
AACCCGGATT CTGACCTGTT TCGTCTTCAT CCTGACTGGG TATTGTCAAT GCCTGGATAT
TCCCAGCCAA CCGGAAGATA TCAGTATGTT CTTAACCTGA ATATTCCAGA GGCCTTTGCT
TACATTTATG AACGTTTCTT ATGGTTACTG GGAGAACATC CGGTTGATTA TGTGAAATGG
GACATGAATC GTGAGCTTGT ACAGGCAGGG CATGAAGGCC GTGCGGCAGC AGATGCACAG
ACCCGTCAGT TCTATCGATT GCTTGATCTC CTCCGTGAAC GTTTTCCACA TGTTGAGTTT
GAGTCCTGTG CTTCCGGTGG GGGGCGTATT GACTTCGAAG TCCTGAAACG CACACACCGG
TTCTGGGCAT CTGACAATAA TGATGCCCTG GAGCGCTGCA CCATACAACG TGGCATGAGT
TACTTTTTCC CTCCTGAGGT GATGGGGGCG CATATTGGCC ATCGCCGCTG CCATGCAACT
TTCCGGCAGC ACAGCATCGC TTTTCGTGGG CTGACGGCAT TGTTCGGCCA TATGGGGCTG
GAGCTGGATC CGGTGGCCGC AGATGCGAAG GAATCTGACG GTTATCGCCG GTATGCCTTG
CTCTATAAAG AATGGCGACA ACTGATTCAT ACAGGAGTTC TCTGGCGTGT GGATATGCCA
GATCCTTCGA TACAGGTTCA GGGAGTCGTC AGCCCTGATC AGTCTCAGGC ACTTTTTATG
ATCAGCCAGC TTGCAATGCC GGATTACACC TTACCAGGCA TACTTCGTTT TCCCGGTCTG
GCGGCGGAAG TGCGTTACCG GCTTCGGGTT ATTGATCACC CGGACCTCCA GGTGGTTGGT
GAAGGCGGTC ATACCATGCG CAAATTACCT GTCTGGATGA ATCAGAGCCT TGAGGCCAGT
GGTGAATGGC TGGCACAGGG AGGGATTCAG CTCCCCGTAC TGGATCCGGA GAGTGCGATT
TTGATAGCAC TTGAAAGAGC TGTGTGA
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| Protein sequence | MVSKYCRLSS PRSDLIIKTR PHAEIIWWGS ALKHFSPDDC ASLERPVANG RLDIDTPLTL
MAENALGLFS SPGLEGHRNG LDASPVFYTV DVEHTENTLR LTSEDSVAGL RLVSELVMTP
SGILKVRHAL TNLREGDWQI NRFAITLPLA ERAEEVMAFH GRWTREFQPH RVRLTHDAFV
LENRRGRTSH EHFPALIVGT PGFSEQQGEV WAVHLGWSGN HRMRCEAKTD GRRYVQAEAL
WMPGEKALRK NETLYTPWLY ACHSADGLNG MSQQYHRFLR DEIIRFPEQK PRPVHLNTWE
GIYFNHNPDY IMQMAERAAA LGVERFIIDD GWFKGRNDDR AALGDWYTDE QKYPNGLMPV
IKHVKSLGME FGIWVEPEMI NPDSDLFRLH PDWVLSMPGY SQPTGRYQYV LNLNIPEAFA
YIYERFLWLL GEHPVDYVKW DMNRELVQAG HEGRAAADAQ TRQFYRLLDL LRERFPHVEF
ESCASGGGRI DFEVLKRTHR FWASDNNDAL ERCTIQRGMS YFFPPEVMGA HIGHRRCHAT
FRQHSIAFRG LTALFGHMGL ELDPVAADAK ESDGYRRYAL LYKEWRQLIH TGVLWRVDMP
DPSIQVQGVV SPDQSQALFM ISQLAMPDYT LPGILRFPGL AAEVRYRLRV IDHPDLQVVG
EGGHTMRKLP VWMNQSLEAS GEWLAQGGIQ LPVLDPESAI LIALERAV
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