| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3113 |
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| Symbol | rafR |
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| ID | 6143982 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 3198745 |
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| End bp | 3199755 |
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| Gene Length | 1011 bp |
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| Protein Length | 336 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641617980 |
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| Product | HTH-type transcriptional regulator RafR |
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| Protein accession | YP_001745130 |
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| Protein GI | 170682779 |
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| COG category | [K] Transcription |
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| COG ID | [COG1609] Transcriptional regulators |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.021598 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACTTA AGGCGATTGC CACTGCACTC GGAGTTTCTG TCACCACTGT CAGTCGGGCT
CTTGGAGGCT ATGCAGATGT GTCAGCTTCC ACCCGTGCAC GGGTGGAAGC TGAAGCTCGT
CGACGCGGTT ACCGTCCTAA TACTCAGGCA AGAAGACTCA AAACCGGTAA AACCGATGCT
GTCGGTCTGG TTTATCCTGG ACGTGATGTG CCATTTAACA GTGGTGTTTT TATGGATATG
GTCAGTTGCA TCAGCCGGGA ACTTGCTCAC CATGATATTG ACTTACTACT GATAGCTGAT
GATGAGCATG CCGATTGCCA CAGCTATATG CGGCTTGTTG AAAGTCGCAG GGTTGATGCT
CTCATCATTG CACACACTCT GGATGACGAT CCCCGTATCA CACACCTTCA TAAAGCAGGT
ATTCCATTTC TGGCTCTTGG TCGGGTACCA TCTGGTCTGC CCTGTGCGTG GTTTGACTTT
GATAATCATG CCGGGACTGG ACAGGCAACC CAGAAACTGA TTGCTTTGGG ACATAAACGT
ATTGCATTGT TGAGTGAAGA CACTTCACAT AGCTATGTTG TTGCAAGACG TCAGGGATGG
CTTGATGCAC TGAATGAGCA TGAACTGGAA GATACATGGC TGCGGCTGGT TTCTCCCACA
CGGCGAGCAG GATATCAGGC CGTGATGGAG TTAATGTCAC TACCGATACC ACCAACAGCT
ATTATTACTG ACAATGACCT GAGTGGAGAT GGTGCTGCCA TGGCACTGCA GTTGAGCGGT
CGTCTTTCAG GAAAAGATGC GGTATCTCTG GTTGTATATG ATGGTTTGCC ACAGGACAGT
ATTATTGAGC TGGATGTGGC TGCAGTTATT CAGTCAACAC GAAGCCTCGT TGGTCGCCAG
ATTTCCGAGA TGATATATCA GATAATTACT GATTCATCAT CAAAACCACT ACAGGTTGTC
TGGAACCCGG TATTTTATCC GGGAAAGACG ATTCATCCTC CTTGCTCCTG A
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| Protein sequence | MSLKAIATAL GVSVTTVSRA LGGYADVSAS TRARVEAEAR RRGYRPNTQA RRLKTGKTDA
VGLVYPGRDV PFNSGVFMDM VSCISRELAH HDIDLLLIAD DEHADCHSYM RLVESRRVDA
LIIAHTLDDD PRITHLHKAG IPFLALGRVP SGLPCAWFDF DNHAGTGQAT QKLIALGHKR
IALLSEDTSH SYVVARRQGW LDALNEHELE DTWLRLVSPT RRAGYQAVME LMSLPIPPTA
IITDNDLSGD GAAMALQLSG RLSGKDAVSL VVYDGLPQDS IIELDVAAVI QSTRSLVGRQ
ISEMIYQIIT DSSSKPLQVV WNPVFYPGKT IHPPCS
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