| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3109 |
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| Symbol | speC |
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| ID | 6143820 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 3193823 |
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| End bp | 3195958 |
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| Gene Length | 2136 bp |
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| Protein Length | 711 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641617977 |
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| Product | ornithine decarboxylase |
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| Protein accession | YP_001745128 |
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| Protein GI | 170681617 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.015732 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATCAA TGAATATTGC CGCCAGTAGT GAACTGGTAT CCCGACTTTC TTCTCATCGT
CGCGTGGTGG CGTTGGGAGA TACTGATTTT ACGGACGTCG CGGCAGTCGT CATTACCGCT
GCGGATAGTC GCAGTGGCAT TCTTGCGTTG CTTAAGCGCA CCGGTTTTCA TCTACCGGTG
TTTTTGTATT CCGAACATGC TGTTGAATTA CCTGCGGGCG TTACGGCGGT AATCAACGGC
AACGAGCAGC AGTGGCTGGA GCTGGAATCC GCAGCCTGTC AGTATGAAGA GAATTTGCTG
CCACCGTTTT ATGACACGCT GACGCAGTAC GTTGAGATGG GCAACAGCAC CTTTGCTTGC
CCTGGACATC AACATGGTGC GTTTTTTAAA AAGCATCCTG CCGGACGCCA TTTTTACGAT
TTCTTTGGTG AGAACGTCTT TCGCGCCGAT ATGTGTAACG CTGACGTAAA ATTGGGCGAT
CTGCTTATTC ATGAAGGATC GGCGAAGGAT GCGCAGAAAT TCGCAGCCAA AGTCTTTCAT
GCCGATAAAA CCTATTTTGT GCTGAACGGC ACATCGGCAG CGAATAAAGT GGTGACGAAT
GCGCTGTTAA CGCGTGGCGA TCTGGTGCTC TTCGACCGTA ACAACCATAA GTCGAATCAT
CACGGCGCGC TGATTCAGGC GGGGGCGACG CCGGTCTATC TGGAAGTTTC ACGTAACCCG
TTTGGTTTCA TTGGCGGTAT TGATGCGCAC TGTTTTAATG AAGAGTATCT GCGCCAGCAA
ATTCGCGACG TTGCGCCAGA AAAAGCTGAG TTGCCGCGCC CGTTTCGCCT GGCGATTATT
CAGCTGGGAA CCTATGACGG CACTGTCTAT AACGCCCGTC AGGTGATCGA TACCGTTGGG
CATCTGTGTG ATTACATTCT GTTTGATTCC GCGTGGGTCG GTTACGAACA GTTTATCCCG
ATGATGGCGG ATAGCTCGCC GCTGCTGTTA GAACTTAACG AAAACGATCC GGGGATCTTT
GTGACCCAGT CGGTGCACAA ACAGCAGGCG GGATTCTCAC AGACGTCGCA GATCCATAAA
AAAGATAACC ATATCCGTGG ACAGGCGCGT TTTTGCCCGC ATAAGCGGTT GAATAATGCC
TTTATGCTCC ATGCTTCTAC CAGCCCGTTC TATCCGCTGT TCGCCGCGCT GGACGTTAAC
GCCAAAATTC ATGAAGGGGA GAGTGGGCGT CGGCTGTGGG CGGAGTGCGT TGCGTTGGGG
ATTGAAGCCC GGAAGGCGAT TCTTGCGCGC TGTAAGCTGT TCCGCCCGTT TATCCCGCCC
GTTGTTGATG GCAAATTGTG GCAGGATTAT CCGACGTCAG TGTTAGCCAG CGACCGCCGT
TTTTTCAGTT TTGAGCCGGG GGCGAAGTGG CACGGCTTTG AAGGATATGC CGCGGATCAG
TATTTTGTTG ATCCGTGCAA GCTGTTACTC ACCACGCCGG GTATCGATGC TGAAACCGGC
GAATATAGCG ACTTTGGCGT TCCGGCGACG ATTCTGGCGC ACTATCTGCG TGAGAACGGC
ATTGTGCCGG AGAAGTGCGA TCTCAATTCC ATTCTGTTCT TATTAACTCC GGCGGAAAGC
CACGAGAAGC TGGCGCAACT GGTGGCGATG CTGGCGCAAT TTGAACAGCA TATTGAGGAT
GACTCGCCGC TGGCTGAGGT GTTGCCGAGC ATTTATAACA AATATCCGGT GCGCTATCGC
GACTACACCC TGCGCCAGTT GTGTCAGGAG ATGCACGATT TGTATGTCAG TTTCGACGTC
AAAGACCTAC AAAAAGCGAT GTTCCGCCAG CAGAGTTTCC CGTCAGTGGT GATGAATCCC
CAGGATGCGC ATAGCGCTTA TATTCGCGGT GAAGTGGAGT TGGTGCGGAT TCGTGATGCC
GAAGGGCGAA TTGCGGCAGA AGGGGCGTTG CCTTATCCCC CTGGCGTGCT TTGCGTGGTG
CCCGGGGAAG TCTGGGGCGG GGCGGTCCAA CGTTATTTCC TTGCGCTGGA AGAAGGGGTG
AATTTGCTGC CAGGTTTTTC ACCGGAGCTG CAAGGTGTCT ATAGCGAAAC CGATGCGGAT
GGCATGAAAC GGTTGTACGG TTATGTGTTG AAGTAA
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| Protein sequence | MKSMNIAASS ELVSRLSSHR RVVALGDTDF TDVAAVVITA ADSRSGILAL LKRTGFHLPV
FLYSEHAVEL PAGVTAVING NEQQWLELES AACQYEENLL PPFYDTLTQY VEMGNSTFAC
PGHQHGAFFK KHPAGRHFYD FFGENVFRAD MCNADVKLGD LLIHEGSAKD AQKFAAKVFH
ADKTYFVLNG TSAANKVVTN ALLTRGDLVL FDRNNHKSNH HGALIQAGAT PVYLEVSRNP
FGFIGGIDAH CFNEEYLRQQ IRDVAPEKAE LPRPFRLAII QLGTYDGTVY NARQVIDTVG
HLCDYILFDS AWVGYEQFIP MMADSSPLLL ELNENDPGIF VTQSVHKQQA GFSQTSQIHK
KDNHIRGQAR FCPHKRLNNA FMLHASTSPF YPLFAALDVN AKIHEGESGR RLWAECVALG
IEARKAILAR CKLFRPFIPP VVDGKLWQDY PTSVLASDRR FFSFEPGAKW HGFEGYAADQ
YFVDPCKLLL TTPGIDAETG EYSDFGVPAT ILAHYLRENG IVPEKCDLNS ILFLLTPAES
HEKLAQLVAM LAQFEQHIED DSPLAEVLPS IYNKYPVRYR DYTLRQLCQE MHDLYVSFDV
KDLQKAMFRQ QSFPSVVMNP QDAHSAYIRG EVELVRIRDA EGRIAAEGAL PYPPGVLCVV
PGEVWGGAVQ RYFLALEEGV NLLPGFSPEL QGVYSETDAD GMKRLYGYVL K
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