| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3097 |
|---|
| Symbol | |
|---|
| ID | 6144156 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | + |
|---|
| Start bp | 3184160 |
|---|
| End bp | 3185296 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641617965 |
|---|
| Product | coproporphyrinogen III oxidase |
|---|
| Protein accession | YP_001745116 |
|---|
| Protein GI | 170681312 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
|---|
| TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.000345052 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGTTAAAT TACCGCCGCT GAGTCTCTAC ATTCACATCC CGTGGTGCGT GCAGAAATGC
CCGTACTGCG ATTTCAACTC TCACGCGTTG AAAGGAGAAG TGCCGCACGA CGATTATGTT
CAGCATCTGC TTAACGATCT GGACAACGAT GTGGCTTACG CTCAGAGCCG TGAAGTAAAG
ACAATTTTTA TTGGCGGTGG TACGCCGAGC CTGCTTTCCG GCCCGGCGAT GCAAACGCTG
CTGGACGGCG TGCGTGCGCG TTTGCCGCTG GCAGCGGATG CAGAAATTAC TATGGAAGCG
AACCCTGGTA CGGTAGAAGC CGATCGCTTT GTCGATTATC AGCGTGCTGG TGTGAACCGC
ATCTCTATTG GTGTGCAGAG TTTTAGCGAA GAAAAGCTGA AACGACTTGG GCGCATTCAT
GGCCCGCAAG AAGCGAAACG AGCTGCGAAG CTGGCGAGCG GTTTAGGGTT ACGTAGCTTT
AACCTCGATT TGATGCATGG GCTGCCGGAT CAATCACTGG AAGAGGCGCT AGGCGATCTG
CGCCAGGCTA TTGAACTGAA TCCTCCGCAT CTTTCCTGGT ATCAACTGAC CATCGAACCT
AATACGCTGT TTGGCTCTCG CCCACCGGTG CTGCCGGACG ACGATGCGTT GTGGGATATA
TTCGAACAGG GGCATCAGTT ATTAACCGCA GCGGGCTATC AGCAGTATGA AACATCCGCT
TACGCCAAAC CAGGTTATCA GTGCCAGCAC AATCTCAACT ACTGGCGATT TGGCGACTAC
ATCGGTATTG GCTGCGGCGC GCACGGCAAA GTCACCTTCC TGGATGGTCG CATTCTGCGT
ACCACCAAAA CGCGTCATCC GCGTGGTTTT ATGCAGGGAA GATATCTGGA AAGCCAGCGT
GATGTCGATG CTGCAGATAA ACCGTTTGAG TTCTTTATGA ATCGCTTCCG TCTGCTGGAA
GCCGCGCCGC GCGTGGAGTT TAGCCAGTAT ACTGGCCTTT CTGAAGAAGT TATTCGCCCA
CAGTTAGAAG AGGCTATCGC TCAGGGTTAT CTCACAGAAT GTGCAGATTA CTGGCAGATA
ACGGAACATG GGAAGTTGTT TTTAAATTCG TTGCTGGAGC TTTTTCTGGC GGAGTAA
|
|---|
| Protein sequence | MVKLPPLSLY IHIPWCVQKC PYCDFNSHAL KGEVPHDDYV QHLLNDLDND VAYAQSREVK
TIFIGGGTPS LLSGPAMQTL LDGVRARLPL AADAEITMEA NPGTVEADRF VDYQRAGVNR
ISIGVQSFSE EKLKRLGRIH GPQEAKRAAK LASGLGLRSF NLDLMHGLPD QSLEEALGDL
RQAIELNPPH LSWYQLTIEP NTLFGSRPPV LPDDDALWDI FEQGHQLLTA AGYQQYETSA
YAKPGYQCQH NLNYWRFGDY IGIGCGAHGK VTFLDGRILR TTKTRHPRGF MQGRYLESQR
DVDAADKPFE FFMNRFRLLE AAPRVEFSQY TGLSEEVIRP QLEEAIAQGY LTECADYWQI
TEHGKLFLNS LLELFLAE
|
|---|
| |