| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3096 |
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| Symbol | rdgB |
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| ID | 6146002 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 3183574 |
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| End bp | 3184167 |
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| Gene Length | 594 bp |
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| Protein Length | 197 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641617964 |
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| Product | putative deoxyribonucleotide triphosphate pyrophosphatase |
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| Protein accession | YP_001745115 |
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| Protein GI | 170679994 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0127] Xanthosine triphosphate pyrophosphatase |
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| TIGRFAM ID | [TIGR00042] non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.00024493 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGCAAAAAG TTGTCCTCGC AACCGGCAAT GCCGGTAAAG TGCGTGAGCT GGCGTCGCTG
CTTAGCGACT TCGGTCTTGA TATCGTGGCC CAAACAGACC TCGGCGTAGA TTCCGCTGAA
GAAACCGGCC TGACCTTTAT CGAAAATGCG ATTCTGAAAG CGCGCCATGC GGCAAAAGTG
ACCGGTTTAC CGGCAATTGC CGACGACTCT GGTCTGGCGG TAGATGTGCT TGGCGGAGCG
CCGGGCATTT ACTCCGCGCG TTATTCCGGT GAAGACGCGA CCGATCAAAA GAATCTGCAA
AAATTGCTGG AAACACTGAA AGACGTACCG GACGACCAAC GTCAGGCGCG TTTCCACTGC
GTGCTGGTAT ATCTGCGTCA CGCGGAAGAT CCCACTCCGC TGGTGTGCCA CGGTAGCTGG
CCGGGCGTGA TTACTCGTGA ACCAGCGGGC ACTGGTGGCT TTGGTTATGA TCCAATCTTC
TTCGTACCTT CCGAAGGGAA AACCGCTGCC GAACTGACCC GCGAAGAAAA GAGCGCCATT
TCCCACCGTG GTCAGGCATT GAAACTGCTG CTGGACGCTT TACGTAATGG TTAA
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| Protein sequence | MQKVVLATGN AGKVRELASL LSDFGLDIVA QTDLGVDSAE ETGLTFIENA ILKARHAAKV
TGLPAIADDS GLAVDVLGGA PGIYSARYSG EDATDQKNLQ KLLETLKDVP DDQRQARFHC
VLVYLRHAED PTPLVCHGSW PGVITREPAG TGGFGYDPIF FVPSEGKTAA ELTREEKSAI
SHRGQALKLL LDALRNG
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