Gene EcSMS35_3088 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcSMS35_3088 
SymbolrsmE 
ID6146891 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli SMS-3-5 
KingdomBacteria 
Replicon accessionNC_010498 
Strand
Start bp3178032 
End bp3178763 
Gene Length732 bp 
Protein Length243 aa 
Translation table11 
GC content54% 
IMG OID641617956 
Product16S ribosomal RNA methyltransferase RsmE 
Protein accessionYP_001745107 
Protein GI170682172 
COG category[S] Function unknown 
COG ID[COG1385] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR00046] RNA methyltransferase, RsmE family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00138853 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.0000146734 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCGTATCC CCCGCATTTA TCATCCTGAA CCACTGACCA GCCATTCTCA CATCGCGCTT 
TGCGAAGATG CCGCCAACCA TATCGGGCGC GTACTGCGCA TGGGGCCGGG GCAGGCGTTG
CAATTGTTTG ACGGCAGCAA CCGGGTCTTT GACGCCGAAA TTACCAGCGC CAGCAAAAAA
AGCGTGGAAG TGAAAGTGCT GGAAGGCCAG CTCGACGATC GCGAATCTCC GCTGCATATT
CACCTCGGTC AGGTGATGTC GCGTGGTGAA AAAATGGAAT TTACGATCCA GAAATCGATC
GAACTCGGTG TAAGCCTCAT TACGCCACTT TTTTCTGAGC GCTGCGGCGT TAAACTGGAT
AGTGAACGTC TGAACAAGAA GCTCCAGCAG TGGCAGAAGA TTGCAATTGC TGCCTGTGAG
CAGTGTGGTC GTAACCGGGT GCCGGAAATC CGTCCAGCGA TGGATCTGGA AGCCTGGTGT
GCAGAGCAGG ATGAAGGACT GAAACTGAAT CTTCACCCTC GCGCCAGTAA CAGCATCAAT
ACGTTGCCGT TACCGGTCGA ACGTGTCCGC CTGCTGATTG GCCCGGAAGG CGGTTTATCG
GCAGATGAAA TTGCCATGAC TGCCCGCTAT CAATTTACTG ATATCCTGTT GGGACCTCGC
GTTTTGCGTA CAGAGACAAC TGCGCTCACC GCCATTACCG CGCTACAAGT ACGATTTGGC
GATTTGGGCT AA
 
Protein sequence
MRIPRIYHPE PLTSHSHIAL CEDAANHIGR VLRMGPGQAL QLFDGSNRVF DAEITSASKK 
SVEVKVLEGQ LDDRESPLHI HLGQVMSRGE KMEFTIQKSI ELGVSLITPL FSERCGVKLD
SERLNKKLQQ WQKIAIAACE QCGRNRVPEI RPAMDLEAWC AEQDEGLKLN LHPRASNSIN
TLPLPVERVR LLIGPEGGLS ADEIAMTARY QFTDILLGPR VLRTETTALT AITALQVRFG
DLG