Gene EcSMS35_3087 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcSMS35_3087 
SymbolendA 
ID6147036 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli SMS-3-5 
KingdomBacteria 
Replicon accessionNC_010498 
Strand
Start bp3177245 
End bp3177952 
Gene Length708 bp 
Protein Length235 aa 
Translation table11 
GC content54% 
IMG OID641617955 
Productendonuclease I 
Protein accessionYP_001745106 
Protein GI170682683 
COG category[L] Replication, recombination and repair 
COG ID[COG2356] Endonuclease I 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.00686191 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.0000298257 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTACCGTT ATTTGTCTAT TGCTGCGGTG GTACTGAGCG CAGCATTTTC CAGCCCGGCG 
TTGGCCGAAG GTATCAATAG TTTTTCTCAG GCGAAAGCCG CGGCGGTAAA AGTCCACGCT
GACGCGCCCG GTACGTTTTA TTGCGGATGT AAAATTAACT GGCAGGGCAA AAAAGGCGTT
GTTGATCTGC AATCGTGCGG CTATCAGGTG CGCAAAAATG AAAACCGCGC CAGCCGCGTA
GAGTGGGAAC ACGTCGTTCC TGCCTGGCAA TTCGGTCACC AGCGCCAGTG CTGGCAGGAC
GGTGGACGTA AAAACTGTGC TAAAGATCCG GTCTATCGCA AGATGGAAAG CGATATGCAT
AACCTGCAAC CGTCAGTCGG TGAAGTGAAT GGCGATCGCG GCAACTTTAT GTACAGCCAG
TGGAATGGCG GCGAAGGCCA GTACGGTCAA TGCGCCATGA AGGTCGATTT CAAAGAAAAA
GCAGCCGAAC CACCAGCGCG TGCACGCGGT GCCATTGCGC GCACCTACTT CTATATGCGT
GACCAATACA ACCTGACACT CTCTCGCCAG CAAACGCAGC TGTTCAACGC ATGGGACAAG
ATGTATCCGG TTACCGACTG GGAGTGCGAG CGCGATGAAC GCATCGCGAA GGTGCAGGGC
AATCATAACC CGTATGTGCA ACGCGCTTGC CAGGCGCGAA AGAGCTAA
 
Protein sequence
MYRYLSIAAV VLSAAFSSPA LAEGINSFSQ AKAAAVKVHA DAPGTFYCGC KINWQGKKGV 
VDLQSCGYQV RKNENRASRV EWEHVVPAWQ FGHQRQCWQD GGRKNCAKDP VYRKMESDMH
NLQPSVGEVN GDRGNFMYSQ WNGGEGQYGQ CAMKVDFKEK AAEPPARARG AIARTYFYMR
DQYNLTLSRQ QTQLFNAWDK MYPVTDWECE RDERIAKVQG NHNPYVQRAC QARKS