| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3081 |
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| Symbol | speA |
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| ID | 6142594 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 3170821 |
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| End bp | 3172719 |
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| Gene Length | 1899 bp |
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| Protein Length | 632 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641617949 |
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| Product | arginine decarboxylase |
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| Protein accession | YP_001745100 |
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| Protein GI | 170679666 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1166] Arginine decarboxylase (spermidine biosynthesis) |
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| TIGRFAM ID | [TIGR01273] arginine decarboxylase, biosynthetic |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.602145 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.00168239 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCTCCC AGGAAGCCAG CAAGATGCTG CGTACTTACA ATATTGCCTG GTGGGGCAAT
AACTACTATG ACGTTAACGA GCTGGGCCAC ATTAGCGTGT GCCCGGACCC GGACGTCCCG
GAAGCTCGCG TCGATCTCGC GCAGTTAGTG AAAACTCGTG AAGCACAGGG CCAGCGTCTG
CCTGCACTGT TCTGTTTCCC ACAGATCCTG CAGCACCGTT TGCGTTCTAT TAACGCCGCG
TTCAAACGTG CGCGGGAATC CTACGGCTAT AACGGCGATT ACTTCCTCGT TTATCCGATC
AAAGTTAACC AGCACCGCCG CGTGATCGAG TCCCTGATTC ATTCGGGCGA ACCGCTGGGT
CTGGAAGCCG GTTCCAAAGC CGAGTTGATG GCAGTGCTGG CACATGCTGG CATGACTCGT
AGCGTCATCG TCTGCAACGG TTATAAGGAT CGCGAATATA TCCGCCTGGC ATTAATTGGC
GAGAAGATGG GCCACAAGGT CTATCTGGTC ATTGAGAAGA TGTCAGAAAT CGCCATTGTG
CTGGATGAAG CAGAACGTCT GAATGTCGTT CCTCGTCTGG GCGTGCGTGC ACGTCTGGCC
TCGCAGGGCT CGGGGAAATG GCAGTCCTCC GGCGGGGAAA AATCGAAGTT CGGCCTGGCT
GCGACTCAGG TACTGCAACT GGTTGAAACG CTGCGTGAAG CCGGGCGTCT CGACAGTCTG
CAACTGCTGC ACTTCCACCT CGGTTCGCAG ATGGCGAATA TTCGCGATAT CGCGACAGGC
GTTCGTGAAT CCGCGCGTTT CTATGTTGAA CTGCACAAGC TGGGCGTCAA TATTCAGTGC
TTCGACGTCG GCGGCGGTCT GGGCGTGGAC TATGAAGGCA CCCGTTCGCA GTCTGACTGT
TCGGTGAACT ACGGCCTCAA TGAATACGCC AACAACATCA TCTGGGCGAT TGGTGATGCG
TGTGAAGAAA ATGGTCTGCC ACATCCGACG GTAATCACCG AGTCGGGTCG TGCGGTGACT
GCGCATCACA CCGTGCTGGT GTCGAATATC ATCGGCGTGG AACGTAACGA ATACACGGTG
CCGACCGCGC CTGCAGAAGA CGCACCGCGC GCCCTGCAAA GCATGTGGGA AACCTGGCAG
GAGATGCACG AACCGGGAAC TCGCCGTTCT CTGCGTGAAT GGTTACACGA CAGCCAGATG
GATCTGCACG ATATTCATAT CGGCTACTCT TCCGGCACCT TTAGCCTGCA AGAACGTGCA
TGGGCAGAAC AACTCTATCT GAGCATGTGC CATGAAGTGC AGAAGCAACT GGATCCGCAA
AACCGTGCGC ATCGTCCGAT TATCGACGAA CTGCAGGAAC GTATGGCGGA CAAAATGTAC
GTCAACTTCT CGCTGTTCCA GTCGATGCCG GACGCATGGG GGATCGACCA GTTGTTCCCG
GTTCTGCCGC TGGAAGGGTT GGATCAAGTG CCGGAGCGCC GCGCTGTGCT GCTGGATATT
ACCTGTGACT CTGACGGTGC TATTGATCAC TACATCGATG GTGATGGTAT TGCCACGACA
ATGCCCATGC CGGAGTACGA TCCAGAGAAT CCGCCGATGC TCGGTTTCTT CATGGTCGGC
GCATATCAGG AGATCCTCGG CAACATGCAC AACCTGTTCG GTGATACCGA AGCGGTTGAC
GTGTTCGTCT TCCCTGACGG CAGCGTAGAA GTAGAACTGT CTGACGAAGG CGATACCGTG
GCGGACATGC TGCAATATGT ACAGCTCGAT CCGAAAACGT TGTTAACCCA GTTCCGTGAT
CAAGTGAAGA AAACCGATCT TGATGCTGAA CTGCAACAAC AGTTCCTTGA AGAGTTCGAG
GCAGGTTTGT ACGGTTATAC CTATCTTGAA GATGAATAA
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| Protein sequence | MSSQEASKML RTYNIAWWGN NYYDVNELGH ISVCPDPDVP EARVDLAQLV KTREAQGQRL
PALFCFPQIL QHRLRSINAA FKRARESYGY NGDYFLVYPI KVNQHRRVIE SLIHSGEPLG
LEAGSKAELM AVLAHAGMTR SVIVCNGYKD REYIRLALIG EKMGHKVYLV IEKMSEIAIV
LDEAERLNVV PRLGVRARLA SQGSGKWQSS GGEKSKFGLA ATQVLQLVET LREAGRLDSL
QLLHFHLGSQ MANIRDIATG VRESARFYVE LHKLGVNIQC FDVGGGLGVD YEGTRSQSDC
SVNYGLNEYA NNIIWAIGDA CEENGLPHPT VITESGRAVT AHHTVLVSNI IGVERNEYTV
PTAPAEDAPR ALQSMWETWQ EMHEPGTRRS LREWLHDSQM DLHDIHIGYS SGTFSLQERA
WAEQLYLSMC HEVQKQLDPQ NRAHRPIIDE LQERMADKMY VNFSLFQSMP DAWGIDQLFP
VLPLEGLDQV PERRAVLLDI TCDSDGAIDH YIDGDGIATT MPMPEYDPEN PPMLGFFMVG
AYQEILGNMH NLFGDTEAVD VFVFPDGSVE VELSDEGDTV ADMLQYVQLD PKTLLTQFRD
QVKKTDLDAE LQQQFLEEFE AGLYGYTYLE DE
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