Gene EcSMS35_2987 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcSMS35_2987 
Symbol 
ID6146229 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli SMS-3-5 
KingdomBacteria 
Replicon accessionNC_010498 
Strand
Start bp3068576 
End bp3069268 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content50% 
IMG OID641617857 
Productputative racemase 
Protein accessionYP_001745009 
Protein GI170681384 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1794] Aspartate racemase 
TIGRFAM ID[TIGR00035] aspartate racemase 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value0.0674464 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAACAA TTGGTTTGCT GGGAGGAATG AGCTGGGAAT CCACCATTCC TTACTATCGT 
TTGATAAATG AAGGTATTAA ACAGCGGCTT GGTGGGCTTC ACTCTGCGCA AGTGCTGCTA
CATAGCGTCG ATTTTCATGA AATAGAAGAG TGCCAGCGTC GCGGTGAGTG GGACAAAACC
GGGGATATTC TGGCTGAGGC GGCGCTTGGC TTACAGCGGG CGGGCGCAGA AGGTATTGTG
TTATGTACCA ATACGATGCA CAAAGTGGCG GATGCCATTG AGTCTCGTTG CTCTCTGCCT
TTCTTACACA TAGCGGATGC CACTGGACGT GCAATTATCC GGGCTGGAAT GACTCGTGTG
GCGCTGCTGG GTACGCGTTA CACCATGGAA CAGGATTTTT ATCGCGGGCG GCTGACGGAA
CAATTTTCCA TCAACTGTCT CATTCCTGAA GCGGATGAAC GGGCGAAAAT TAATCAGATT
ATTTTTGAAG AACTGTGTCT GGGGCAATTT ACCGAAGCGT CACGCACTTA TTATGCGCAA
GTGATTGCTC GCCTTGCAGA ACAGGGCGCA CAGGGCGTTA TTTTTGGCTG CACAGAAATT
GGTTTACTGG TGCCAGAAGA GCGCAGTGTT CTGCCTGTGT TTGATACCGC GGCGATCCAT
GCCGAGGATG CTGTCGCTTT TATGCTGTCG TAG
 
Protein sequence
MKTIGLLGGM SWESTIPYYR LINEGIKQRL GGLHSAQVLL HSVDFHEIEE CQRRGEWDKT 
GDILAEAALG LQRAGAEGIV LCTNTMHKVA DAIESRCSLP FLHIADATGR AIIRAGMTRV
ALLGTRYTME QDFYRGRLTE QFSINCLIPE ADERAKINQI IFEELCLGQF TEASRTYYAQ
VIARLAEQGA QGVIFGCTEI GLLVPEERSV LPVFDTAAIH AEDAVAFMLS