| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2972 |
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| Symbol | ppdB |
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| ID | 6147236 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 3051784 |
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| End bp | 3052347 |
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| Gene Length | 564 bp |
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| Protein Length | 187 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641617841 |
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| Product | hypothetical protein |
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| Protein accession | YP_001744993 |
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| Protein GI | 170680768 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4795] Type II secretory pathway, component PulJ |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0157774 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.00584782 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGCCTGTAA AAGAGCAAGG TTTTTCTCTG CTGGAAGTGT TGATTGCTAT GGCGATCAGT
AGCGTATTGT TGCTGGGGGC TGCACGCTTT CTGCCTGCGT TACAGCGTGA AAGTTTAACG
AGCACCCGTA AGCTGGCGCT GGAAGATGAA ATCTGGCTGC GGGTATTTAC CGTCGCGAAG
CATCTCCAGA GGGCGGGTTA TTGTCATGGC AGCTGTACCG GCGAAGGGCT GGAAATTGTC
GGACAGGGTG ACTGTGTCAT TGTGCAGTGG GATGCGAACA GTAACGGTAT CTGGGATCGC
GAACCGGTAA AAGAGTCCGA CCAGATTGGA TTTCGTCTGA AGGAGCATGT GCTGGAAACG
CTACGCGGTG CGACATCCTG TGAAGGTAAG GGCTGGGATA AAGTGACTAA TCCGGATGCC
ATCATTATCG ACACTTTTCA GGTCGTACGT CAGGATGTCA GCGGCTTCTC GCCGGTGTTG
ACGGTTAATA TGCGTGCTGC CAGTAAGTCT GAACCGCAAA CCGTGGTGAA TGCCAGCTAT
AGCGTGACAG GATTCAACCT GTGA
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| Protein sequence | MPVKEQGFSL LEVLIAMAIS SVLLLGAARF LPALQRESLT STRKLALEDE IWLRVFTVAK
HLQRAGYCHG SCTGEGLEIV GQGDCVIVQW DANSNGIWDR EPVKESDQIG FRLKEHVLET
LRGATSCEGK GWDKVTNPDA IIIDTFQVVR QDVSGFSPVL TVNMRAASKS EPQTVVNASY
SVTGFNL
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