| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2931 |
|---|
| Symbol | truC |
|---|
| ID | 6143855 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 3006253 |
|---|
| End bp | 3007035 |
|---|
| Gene Length | 783 bp |
|---|
| Protein Length | 260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641617800 |
|---|
| Product | tRNA pseudouridine synthase C |
|---|
| Protein accession | YP_001744955 |
|---|
| Protein GI | 170682843 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 0.980626 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGAAA TACTCTATCA GGATGAATGG CTGGTTGCGG TAAATAAACC CTCCGGCTGG
CTGGTTCACC GCAGCTGGCT GGATCGCGAC GAGAAAGTAG TGGTCATGCA AACCGTGCGT
GACCAGATAG GCCAGCATGT GTTTACTGCT CATCGTCTGG ACCGACCCAC TTCTGGTGTG
TTGTTGATGG GATTATCCAG CGAGGCCGGA CGGCTGCTGG CACAACAGTT TGAACAGCAC
CAAATCCAGA AACGTTACCA TGCGATTGTG CGCGGCTGGT TGATGGAAGA AGCGGTGCTG
GATTATCCAC TGGTGGAAGA ACTGGACAAA ATCGCTGATA AATTTGCCCG CGAAGATAAA
GGCCCGCAGC CAGCAGTGAC GCATTATCGC GGTCTGGCGA CCGTAGAAAT GCCGGTAGCG
ACCGGACGTT ACCCGACCAC GCGCTACGGC CTGGTGGAAC TGGAGCCGAA AACCGGACGT
AAGCACCAGC TCCGTCGCCA TCTTGCCCAT TTGCGCCACC CGATTATTGG CGACAGCAAA
CATGGTGATT TACGCCAGAA TCGCAGCGGT GCTGAACATT TTGGCCTTCA GCGGTTAATG
CTGCATGCCA GTCAGTTGTC ATTGACGCAT CCTTTTACTG GCGAGCCGCT GACTATTCAC
GCGGGCCTGG ACGACACCTG GATGCAGGCG TTATCACAAT TTGGCTGGCG GGGTCTGCTT
CCTGAAAATG AAAGGGTTGA GTTCAGTGCG CCATCGGGTC AGGATGGAGA GATAAGTTCC
TAA
|
|---|
| Protein sequence | MLEILYQDEW LVAVNKPSGW LVHRSWLDRD EKVVVMQTVR DQIGQHVFTA HRLDRPTSGV
LLMGLSSEAG RLLAQQFEQH QIQKRYHAIV RGWLMEEAVL DYPLVEELDK IADKFAREDK
GPQPAVTHYR GLATVEMPVA TGRYPTTRYG LVELEPKTGR KHQLRRHLAH LRHPIIGDSK
HGDLRQNRSG AEHFGLQRLM LHASQLSLTH PFTGEPLTIH AGLDDTWMQA LSQFGWRGLL
PENERVEFSA PSGQDGEISS
|
|---|
| |