| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2923 |
|---|
| Symbol | rumA |
|---|
| ID | 6146651 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 2996951 |
|---|
| End bp | 2998252 |
|---|
| Gene Length | 1302 bp |
|---|
| Protein Length | 433 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641617792 |
|---|
| Product | 23S rRNA 5-methyluridine methyltransferase |
|---|
| Protein accession | YP_001744947 |
|---|
| Protein GI | 170681551 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00164007 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCAAT TCTACTCTGC AAAACGACGC ACGACGACGC GTCAGATCAT AACCGTTTCA
GTCAATGACC TCGACTCTTT TGGTCAGGGC GTGGCGCGAC ATAACGGCAA AACGTTATTT
ATTCCTGGAT TATTGCCACA GGAAAACGCG GAAGTTACTG TTACTGAAGA TAAAAAACAG
TACGCCCGCG CTAAAGTCGT ACGCCGGTTA AGCGATAGCC CGGAACGCGA AACGCCACGC
TGCCCTCATT TTGGCGTATG CGGTGGCTGT CAGCAACAAC ACGCCAGCGA GGATTTACAG
CAGCGAAGCA AAAGTGCGGC ACTCGCCCGA TTAATGAAAC ACGAAGTCTC TGAAGTGATC
GCCGATGTTC CCTGGGGCTA TCGCCGTCGC GCGCGTTTAA GTTTGAACTA CTTACCGAAA
ACACAGCAAC TTCAGATGGG GTTTCGCAAA GCGGGCTCCA GTGACATTGT CGACGTTAAA
CAATGCCCCA TTTTAGTGCC CCAACTTGAA GCATTGCTGC CCAAAGTCAG GGCATGCCTG
GGCAGCTTAC AAGCTATGCG CCATCTTGGT CATGTTGAAC TGGTACAGGC AACCAGCGGC
ACGCTGATGA TTTTGCGCCA TACCGCACCG CTAAGTTCGG TAGATCGCGA AAAACTGGAA
CGCTTTTCGC ATTCTGAAGG CCTGGATCTG TATCTCGCCC CCGATAGTGA GATACTCGAA
ACCGTCTCTG GTGAGATGCC CTGGTATGAC TCAAACGGGT TGCGCTTAAC TTTTAGCCCG
CGCGATTTTA TTCAGGTCAA TGCGGGTGTG AACCAAAAAA TGGTAGCGCG TGCGTTGGAA
TGGCTGGATG TACAACCTGA AGATCGCGTA CTGGATCTGT TCTGCGGTAT GGGCAACTTT
ACACTGCCAT TGGCGACACA AGCTGCCAGT GTGGTGGGTG TAGAAGGCGT TCCGGCGCTG
GTGGAAAAAG GCCAGCAGAA TGCGCGTCTT AATGGCTTAC ACAATGTGAC GTTTTATCAC
GAAAATCTTG AAGAAGATGT CACAAAGCAG CCGTGGGCGA AAAACGGCTT CGATAAAGTG
TTGCTGGACC CGGCGCGAGC AGGTGCCGCA GGTGTTATGC AGCAAATTAT AAAACTGGAA
CCTATTCGTA TAGTTTATGT ATCCTGTAAT CCTGCAACGC TGGCTCGGGA TAGCGAAGCG
TTATTAAAAG CAGGATATAC CATTGCGCGA CTGGCGATGC TGGATATGTT CCCACACACG
GGACATCTGG AATCGATGGT ACTTTTCTCG CGCGTTAAAT AG
|
|---|
| Protein sequence | MAQFYSAKRR TTTRQIITVS VNDLDSFGQG VARHNGKTLF IPGLLPQENA EVTVTEDKKQ
YARAKVVRRL SDSPERETPR CPHFGVCGGC QQQHASEDLQ QRSKSAALAR LMKHEVSEVI
ADVPWGYRRR ARLSLNYLPK TQQLQMGFRK AGSSDIVDVK QCPILVPQLE ALLPKVRACL
GSLQAMRHLG HVELVQATSG TLMILRHTAP LSSVDREKLE RFSHSEGLDL YLAPDSEILE
TVSGEMPWYD SNGLRLTFSP RDFIQVNAGV NQKMVARALE WLDVQPEDRV LDLFCGMGNF
TLPLATQAAS VVGVEGVPAL VEKGQQNARL NGLHNVTFYH ENLEEDVTKQ PWAKNGFDKV
LLDPARAGAA GVMQQIIKLE PIRIVYVSCN PATLARDSEA LLKAGYTIAR LAMLDMFPHT
GHLESMVLFS RVK
|
|---|
| |