| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2900 |
|---|
| Symbol | |
|---|
| ID | 6145029 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 2970432 |
|---|
| End bp | 2971769 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641617769 |
|---|
| Product | major facilitator family transporter |
|---|
| Protein accession | YP_001744924 |
|---|
| Protein GI | 170681816 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACACTT CACCGGTGCG AATGGATGAT TTACCACTTA ACCGTTTTCA CTGCCGCATT
GCTGCGCTCA CTTTCGGTGC GCACCTGACC GACGGTTATG TCCTCGGCGT CATTGGTTAC
GCCATTATTC AGCTTACGCC CGCCATGCAA CTGACGCCGT TTATGGCGGG AATGATTGGC
GGCTCAGCAC TCCTTGGTTT GTTTCTTGGC AGCCTGGTTC TTGGATGGAT CTCCGACCAT
ATTGGTCGGC AAAAAATCTT CACCTTCAGC TTTTTGCTGA TTACGCTCGC TTCGTTCTTG
CAATTTTTTG CCACCACGCC AGAGCATCTT ATTGGGCTGC GCATTTTGAT CGGCATTGGT
CTGGGAGGCG ATTACTCAGT CGGTCACACC TTGCTGGCTG AATTTTCCCC GCGCCGCCAT
CGCGGTATTT TACTGGGCGC ATTCAGCGTG GTGTGGACCG TAGGCTATGT GTTGGCAAGT
ATTGCCGGAC ATCACTTTAT TTCCGAAAAC CCGGAGGCCT GGCGCTGGCT GCTGGCATCA
GCGGCGTTAC CAGCCTTGCT GATTACGCTG CTACGTTGGG GCACGCCGGA ATCGCCACGC
TGGCTACTGC GCCAGGGACG TTTTGCTGAA GCTCACGCTA TTGTGCATCG CTATTTGGGG
CCACATGTTT TACTGGGCGA TGAAGTGGCA GCGGCGACCC ATAAACACAT CAAAACCTTG
TTTTCTTCGC GCTACTGGCG ACGCACGGCG TTTAACAGCG TCTTCTTTGT CTGCCTCGTA
ATCCCATGGT TTGTGATTTA TACCTGGCTG CCGACCATCG CCCAGACTAT TGGTCTGGAG
GATGCGCTGA CCGCCAGCCT GATGCTTAAT GCGTTGTTAA TTGTGGGCGC GCTGCTGGGA
TTAGTTCTGA CGCACCTGCT GGCACATCGC AAGTTTTTGC TGGGAAGTTT TTTGCTGCTG
GCGGCAACGC TGGTAGTGAT GGCCTGTTTG CCTTCCGGCA GTTCATTAAC GCTGCTGCTT
TTTGTTCTCT TCAGCACCAC CATTTCGGCA GTCAGTAATC TGGTGGGCAT TTTGCCTGCG
GAAAGTTTTC CTACTGACAT TCGCTCGCTG GGCGTCGGTT TTGCCACCGC CATGAGTCGG
TTGGGGGCGG CGGTAAGTAC TGGCCTGCTG CCGTGGGTGC TGGCGCAGTG GGGAATGCAA
GCCACCTTAT TGCTCCTGGC GGCAGTGTTG TTGGTTGGTT TTGTTGTGAC CTGGCTATGG
GCACCAGAAA CCAAAGCACT CCCGCTGGTG GCGGCGGGAA ATGTAGGAGG TGCGAATGAA
CATTCTGTTA GCGTTTAA
|
|---|
| Protein sequence | MNTSPVRMDD LPLNRFHCRI AALTFGAHLT DGYVLGVIGY AIIQLTPAMQ LTPFMAGMIG
GSALLGLFLG SLVLGWISDH IGRQKIFTFS FLLITLASFL QFFATTPEHL IGLRILIGIG
LGGDYSVGHT LLAEFSPRRH RGILLGAFSV VWTVGYVLAS IAGHHFISEN PEAWRWLLAS
AALPALLITL LRWGTPESPR WLLRQGRFAE AHAIVHRYLG PHVLLGDEVA AATHKHIKTL
FSSRYWRRTA FNSVFFVCLV IPWFVIYTWL PTIAQTIGLE DALTASLMLN ALLIVGALLG
LVLTHLLAHR KFLLGSFLLL AATLVVMACL PSGSSLTLLL FVLFSTTISA VSNLVGILPA
ESFPTDIRSL GVGFATAMSR LGAAVSTGLL PWVLAQWGMQ ATLLLLAAVL LVGFVVTWLW
APETKALPLV AAGNVGGANE HSVSV
|
|---|
| |