| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2854 |
|---|
| Symbol | hypD |
|---|
| ID | 6147136 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | + |
|---|
| Start bp | 2928028 |
|---|
| End bp | 2929149 |
|---|
| Gene Length | 1122 bp |
|---|
| Protein Length | 373 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 641617723 |
|---|
| Product | hydrogenase expression/formation protein HypD |
|---|
| Protein accession | YP_001744878 |
|---|
| Protein GI | 170680888 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0409] Hydrogenase maturation factor |
|---|
| TIGRFAM ID | [TIGR00075] hydrogenase expression/formation protein HypD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 0.422409 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTTTG TTGATGAATA TCGCGCGCCG GAACAGGTGA TGCAGTTAAT TGAGCATCTG
CGCGAACGTG CTTCACATCT CTCTTACACC GCCGAACGCC CTCTGCGGAT TATGGAAGTG
TGTGGCGGTC ATACCCACGC CATTTTTAAA TTCGGCCTCG ACCAGTTGCT GCCGGAAAAC
GTTGAGTTTA TCCACGGTCC CGGTTGCCCG GTGTGTGTAC TGCCGATGGG TAGAATCGAC
ACCTGCGTGG AGATTGCCAG CCATCCGGAA GTCATCTTCT GTACCTTTGG CGACGCCATG
CGCGTACCAG GGAAACAGGG TTCGCTGTTA CAGGCAAAGG CACGCGGTGC CGATGTGCGC
ATCGTTTACT CGCCGATGGA TGCGTTGAAA CTGGCGCAGG AGAATCCAAC CCGCAAAGTG
GTGTTCTTCG GCTTGGGTTT TGAAACCACC ATGCCGACCA CCGCCATCAC TCTGCAACAG
GCAAAAGCCC GCGATGTGCA GAATTTTTAC TTCTTCTGCC AGCACATTAC GCTCATCCCA
ACACTGCGCA GTTTGCTGGA ACAGCCGGAT AACGGTATCG ACGCGTTCCT CGCGCCCGGC
CACGTCAGTA TGGTGATCGG CACTGATGCC TATAATTTTA TCGCCAGCGA TTTTCATCGT
CCGCTGGTGG TGGCTGGTTT CGAACCGCTT GATCTACTGC AAGGCGTGGT CATGCTGGTG
GAGCAGAAAA TAGCGGCCCA CAGCAAGGTA GAGAATCAGT ATCGTCGGGT GGTGCCGGAT
GCCGGTAACC TGCTGGCGCA ACAGGCGATT GCCGATGTGT TCTGTGTCAA CGGCGACAGC
GAATGGCGCG GCTTAGGCGT GATTGAATCT TCTGGTGTAC ACCTGACGCC GGATTATCAA
CGATTCGATG CCGAAGCGCA TTTCCGCCCG GCACCGCAGC AGGTCTGCGA TGACCCGCGC
GCACGTTGTG GCGAAGTATT AACGGGCAAA TGTAAGCCGC ATCAATGCCC GCTGTTTGGT
AACACCTGTA ATCCTCAAAC CGCGTTTGGT GCGCTGATGG TTTCCTCCGA AGGAGCGTGC
GCCGCGTGGT ATCAGTATCG TCAGCAGGAG AGTGAAGCGT GA
|
|---|
| Protein sequence | MRFVDEYRAP EQVMQLIEHL RERASHLSYT AERPLRIMEV CGGHTHAIFK FGLDQLLPEN
VEFIHGPGCP VCVLPMGRID TCVEIASHPE VIFCTFGDAM RVPGKQGSLL QAKARGADVR
IVYSPMDALK LAQENPTRKV VFFGLGFETT MPTTAITLQQ AKARDVQNFY FFCQHITLIP
TLRSLLEQPD NGIDAFLAPG HVSMVIGTDA YNFIASDFHR PLVVAGFEPL DLLQGVVMLV
EQKIAAHSKV ENQYRRVVPD AGNLLAQQAI ADVFCVNGDS EWRGLGVIES SGVHLTPDYQ
RFDAEAHFRP APQQVCDDPR ARCGEVLTGK CKPHQCPLFG NTCNPQTAFG ALMVSSEGAC
AAWYQYRQQE SEA
|
|---|
| |