Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_2830 |
Symbol | srlR |
ID | 6147447 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | + |
Start bp | 2904274 |
End bp | 2905047 |
Gene Length | 774 bp |
Protein Length | 257 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641617699 |
Product | DNA-bindng transcriptional repressor SrlR |
Protein accession | YP_001744854 |
Protein GI | 170680292 |
COG category | [G] Carbohydrate transport and metabolism [K] Transcription |
COG ID | [COG1349] Transcriptional regulators of sugar metabolism |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.000942539 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAACCTC GTCAGCGTCA GGCCGCCATT CTGGAGTATC TGCAAAAGCA GGGTAAATGC TCGGTTGAAG AATTGGCGCA ATACTTTGAC ACCACAGGAA CAACCATTCG CAAAGATCTG GTCATTCTGG AACATGCCGG AACCGTCATT CGTACTTATG GCGGAGTGGT GTTGAATAAA GAGGAATCCG ATCCGCCTAT CGATCATAAA ACACTCATCA ACACCCACAA GAAAGAGCTG ATTGCAGAAG CTGCCGTTAG TTTTATCCAT GATGGCGATT CGATCATTCT TGATGCTGGC AGTACCGTTT TGCAGATGGT TCCCCTGCTC TCGCGCTTTA ATAACATCAC AGTGATGACC AACAGCCTGC ATATCGTCAA TGCGCTATCC GAACTGGATA ACGAACAAAC TATCCTGATG CCAGGCGGAA CATTTCGTAA AAAATCGGCC TCATTTCACG GGCAACTGGC AGAGAATGCC TTCGAGCATT TCACCTTCGA TAAATTGTTT ATGGGCACCG ACGGCATCGA TCTCAATGCG GGCGTAACCA CCTTCAACGA GGTCTATACC GTCAGTAAGG CGATGTGTAA TGCCGCGCGC GAAGTGATTT TGATGGCTGA CTCATCGAAG TTTGGTCGTA AAAGCCCCAA CGTGGTTTGT AGTCTTGAAA GCGTCGATAA GCTAATTACC GACGTAGGTA TCGATCCGGC GTTTCGTCAG GCGCTGGAAA AGAAAGGGAT CGATGTGATC ATAACCGGAG AGAGCAATGA GTGA
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Protein sequence | MKPRQRQAAI LEYLQKQGKC SVEELAQYFD TTGTTIRKDL VILEHAGTVI RTYGGVVLNK EESDPPIDHK TLINTHKKEL IAEAAVSFIH DGDSIILDAG STVLQMVPLL SRFNNITVMT NSLHIVNALS ELDNEQTILM PGGTFRKKSA SFHGQLAENA FEHFTFDKLF MGTDGIDLNA GVTTFNEVYT VSKAMCNAAR EVILMADSSK FGRKSPNVVC SLESVDKLIT DVGIDPAFRQ ALEKKGIDVI ITGESNE
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