| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2781 |
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| Symbol | gabD |
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| ID | 6146446 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 2864889 |
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| End bp | 2866337 |
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| Gene Length | 1449 bp |
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| Protein Length | 482 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 641617650 |
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| Product | succinate-semialdehyde dehydrogenase I |
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| Protein accession | YP_001744810 |
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| Protein GI | 170679622 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
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| TIGRFAM ID | [TIGR01780] succinate-semialdehyde dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 0.610238 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTTA ACGACAGTAA CTTATTCCGC CAGCAGGCGT TGATTAACGG GGAATGGCTG
GACGCCAACA ATGGCGAGGT CATCGACGTC ACCAATCCGG CGAACGGCGA CAAGCTGGGT
AGCGTACCCA AAATGGGCGC TGATGAAACC CGCGCCGCTA TCGACGCCGC CAACCGCGCT
CTGCCCGCCT GGCGTGCGCT CACCGCCAAA GAACGCGCCA ACATTCTGCG CAACTGGTTC
AATTTGATGA TGGAGCATCA GGACGATTTA GCGCGCCTGA TGACCCTCGA ACAGGGCAAA
CCACTGGCCG AAGCGAAAGG CGAAATCAGC TACGCCGCCT CATTTATTGA GTGGTTTGCT
GAAGAAGGCA AACGTATTTA TGGCGACACC ATTCCCGGTC ATCAGGCCGA TAAACGCCTG
ATTGTTATCA AGCAGCCGAT TGGCGTCACC GCGGCTATCA CGCCGTGGAA CTTCCCGGCG
GCGATGATTA CCCGTAAAGC AGGTCCGGCG CTGGCGGCAG GCTGCACGAT GGTGCTGAAG
CCCGCCAGTC AGACGCCGTT CTCTGCGCTG GCGCTGGCAG AACTGGCGAT TCGCGCGGGC
GTTCCGGCTG GCGTGTTTAA CGTGGTCACC GGTTCGGCGG GCGCGGTCGG TAACGAACTG
ACCAGCAACC CGCTGGTGCG CAAGCTGTCG TTTACCGGCT CGACCGAAAT TGGCCGCCAG
TTAATGGAAC AGTGCGCGAA AGACATCAAG AAAGTGTCGC TGGAGCTGGG CGGCAACGCG
CCGTTTATCG TCTTTGACGA TGCCGACCTC GACAAAGCCG TGGAAGGCGC ACTGGCCTCG
AAATTCCGCA ACGCCGGGCA AACCTGCGTC TGCGCCAACC GTTTATACGT GCAGAACGGC
GTGTATGACC GCTTTGCCGA AAAATTGCAG CAGGCGGTGA GCAAACTGCA CATCGGCAAC
GGGCTGGAGA AAGGCGTCAC CATCGGGCCG CTGATCGATG AAAAAGCGGT AGCAAAAGTG
GAAGAGCATA TTGCCGATGC GCTGGAGAAA GGCGCGCGCG TGGTTTGCGG CGGTAAAGCA
CATGAACGCG GCGGTAACTT CTTCCAGCCG ACCATTCTGG TGGACGTTCC GGCTAACGCC
AAAGTGTCGA AAGAAGAGAC GTTCGGCCCC CTTGCCCCGC TATTCCGCTT TAAAGATGAA
GCCGATGTGA TTGCGCAGGC CAATGACACC GAGTTTGGCC TTGCCGCCTA TTTCTACGCC
CGTGATTTAA GCCGCGTCTT CCGCGTGGGC GAAGCGCTGG AGTACGGCAT CGTCGGCATC
AATACCGGCA TTATTTCCAA TGAAGTGGCC CCGTTCGGCG GCATTAAAGC CTCGGGTCTG
GGTCGTGAAG GTTCGAAGTA TGGCATCGAA GATTACTTAG AAATCAAATA TATGTGCATC
GGTCTTTAA
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| Protein sequence | MKLNDSNLFR QQALINGEWL DANNGEVIDV TNPANGDKLG SVPKMGADET RAAIDAANRA
LPAWRALTAK ERANILRNWF NLMMEHQDDL ARLMTLEQGK PLAEAKGEIS YAASFIEWFA
EEGKRIYGDT IPGHQADKRL IVIKQPIGVT AAITPWNFPA AMITRKAGPA LAAGCTMVLK
PASQTPFSAL ALAELAIRAG VPAGVFNVVT GSAGAVGNEL TSNPLVRKLS FTGSTEIGRQ
LMEQCAKDIK KVSLELGGNA PFIVFDDADL DKAVEGALAS KFRNAGQTCV CANRLYVQNG
VYDRFAEKLQ QAVSKLHIGN GLEKGVTIGP LIDEKAVAKV EEHIADALEK GARVVCGGKA
HERGGNFFQP TILVDVPANA KVSKEETFGP LAPLFRFKDE ADVIAQANDT EFGLAAYFYA
RDLSRVFRVG EALEYGIVGI NTGIISNEVA PFGGIKASGL GREGSKYGIE DYLEIKYMCI
GL
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