| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2748 |
|---|
| Symbol | rluD |
|---|
| ID | 6143501 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 2830000 |
|---|
| End bp | 2830980 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641617618 |
|---|
| Product | 23S rRNA pseudouridine synthase D |
|---|
| Protein accession | YP_001744779 |
|---|
| Protein GI | 170683711 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0255935 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 0.237135 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACAAC GAGTACAGCT CACTGCAACG GTGTCCGAAA ACCAACTCGG TCAACGCTTA
GATCAGGCTT TGGCCGAAAT GTTCCCGGAT TATTCACGTT CGCGGATAAA AGAATGGATC
CTCGACCAGC GCGTGCTGGT TAACGGCAAA GTTTGTGATA AGCCGAAAGA AAAAGTATTG
GGTGGCGAGC AGGTTGCCAT CAACGCTGAG ATTGAAGAAG AAGCGCGTTT TGAACCGCAG
GATATCCCGC TGGATATCGT CTATGAAGAT GACGATATCA TCGTCATTAA TAAACCGCGC
GACCTGGTGG TACATCCTGG CGCGGGTAAC CCGGATGGCA CGGTACTGAA TGCATTGCTT
CATTATTATC CGCCCATTGC CGATGTACCG CGTGCAGGCA TCGTCCATCG TCTGGATAAA
GACACCACTG GCCTGATGGT TGTGGCAAAA ACCGTTCCGG CTCAGACGCG TTTAGTCGAA
TCTTTGCAAA GGCGTGAAAT TACTCGTGAG TATGAAGCGG TGGCAATTGG TCATATGACC
GCTGGCGGTA CAGTAGATGA ACCAATCAGC CGCCACCCGA CCAAACGTAC CCATATGGCG
GTGCATCCGA TGGGCAAACC AGCGGTGACT CACTATCGCA TCATGGAACA CTTCCGTGTG
CACACGCGTC TGCGGTTGCG TCTGGAAACT GGACGTACGC ACCAGATCCG CGTGCATATG
GCCCATATCA CTCATCCGCT GGTGGGCGAT CCGGTTTATG GTGGCCGTCC GCGTCCGCCA
AAAGGTGCTT CGGAAGCGTT TATCTCCACG CTGCGTAAAT TTGACCGCCA GGCGCTTCAT
GCAACCATGC TGCGTCTTTA TCACCCGATC TCCGGTATCG AAATGGAATG GCATGCGCCT
ATTCCACAAG ATATGGTGGA GCTGATTGAG GTGATGCGCG CCGATTTCGA AGAGCATAAA
GATGAAGTGG ACTGGTTATG A
|
|---|
| Protein sequence | MAQRVQLTAT VSENQLGQRL DQALAEMFPD YSRSRIKEWI LDQRVLVNGK VCDKPKEKVL
GGEQVAINAE IEEEARFEPQ DIPLDIVYED DDIIVINKPR DLVVHPGAGN PDGTVLNALL
HYYPPIADVP RAGIVHRLDK DTTGLMVVAK TVPAQTRLVE SLQRREITRE YEAVAIGHMT
AGGTVDEPIS RHPTKRTHMA VHPMGKPAVT HYRIMEHFRV HTRLRLRLET GRTHQIRVHM
AHITHPLVGD PVYGGRPRPP KGASEAFIST LRKFDRQALH ATMLRLYHPI SGIEMEWHAP
IPQDMVELIE VMRADFEEHK DEVDWL
|
|---|
| |