Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_2729 |
Symbol | srmB |
ID | 6143858 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | + |
Start bp | 2808117 |
End bp | 2809451 |
Gene Length | 1335 bp |
Protein Length | 444 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 641617600 |
Product | ATP-dependent RNA helicase SrmB |
Protein accession | YP_001744765 |
Protein GI | 170684258 |
COG category | [J] Translation, ribosomal structure and biogenesis [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG0513] Superfamily II DNA and RNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0618192 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 63 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGTAA CGACTTTTTC CGAACTTGAA CTCGACGAAA GCCTGCTGGA AGCCCTCCAG GATAAAGGTT TCACTCGCCC GACCGCCATT CAGGCTGCCG CCATTCCGCC TGCGCTCGAT GGCCGTGATG TACTCGGTTC TGCGCCGACA GGCACCGGTA AAACGGCGGC GTATCTGCTG CCAGCGTTGC AGCACCTGCT CGATTTCCCA CGTAAGAAAT CCGGTCCGCC GCGTATTTTG ATCCTCACCC CAACTCGCGA GCTGGCGATG CAGGTGGCCG ATCATGCCCG CGAACTGGCG AAACATACGC ATCTGGATAT CGCCACCATC ACCGGCGGCG TGGCCTATAT GAACCACGCG GAAGTGTTCA GCGAAAATCA GGACATCGTG GTCGCCACGA CCGGACGTCT GCTGCAATAC ATAAAAGAAG AGAACTTCGA TTGCCGCGCG GTTGAAACGC TGATCCTCGA CGAAGCAGAC CGTATGCTGG ATATGGGCTT CGCTCAGGAT ATCGAACATA TTGCTGGCGA AACGCGCTGG CGTAAACAGA CCCTGCTCTT TTCGGCAACG CTGGAAGGCG ATGCGATTCA GGACTTTGCC GAGCGTCTGC TGGAAGATCC GGTGGAGGTT TCTGCCAATC CGTCCACCCG TGAGCGCAAA AAAATTCATC AGTGGTATTA CCGCGCCGAT GACCTGGAAC ATAAAACCGC ATTGCTGGTG CACCTGTTAA AACAGCCGGA AGCGACCCGC TCAATTGTGT TTGTGCGTAA GCGTGAGCGT GTGCATGAGC TGGCAAACTG GCTGCGCGAA GCGGGCATCA ACAACTGCTA TCTCGAAGGT GAGATGGTAC AGGGCAAGCG TAACGAAGCG ATCAAGCGTT TGACCGAAGG TCGCGTAAAC GTACTGGTTG CAACCGATGT TGCCGCGCGC GGTATCGACA TTCCTGACGT CAGCCACGTC TTTAACTTCG ATATGCCGCG CAGTGGCGAT ACTTATTTGC ACCGTATCGG ACGTACCGCG CGCGCCGGTC GTAAAGGCAC CGCGATTTCG CTGGTGGAAG CCCATGACCA TCTGCTGCTG GGCAAAGTTG GTCGCTATAT TGAAGAGCCA ATTAAAGCTC GCGTAATTGA CGAGTTACGC CCGAAAACGC GTGCGCCAAG CGAGAAGCAG ACCGGCAAGC CATCGAAGAA AGTACTGGCA AAACGCGCCG AGAAGAAAAA AGCTAAAGAG AAAGAGAAGC CGCGGGTGAA AAAACGCCAT CGCGACACCA AAAATATTGG TAAGCGCCGT AAACCGAGCG GAACGGGCGT GCCACCGCAA ACGACAGAAG AGTAA
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Protein sequence | MTVTTFSELE LDESLLEALQ DKGFTRPTAI QAAAIPPALD GRDVLGSAPT GTGKTAAYLL PALQHLLDFP RKKSGPPRIL ILTPTRELAM QVADHARELA KHTHLDIATI TGGVAYMNHA EVFSENQDIV VATTGRLLQY IKEENFDCRA VETLILDEAD RMLDMGFAQD IEHIAGETRW RKQTLLFSAT LEGDAIQDFA ERLLEDPVEV SANPSTRERK KIHQWYYRAD DLEHKTALLV HLLKQPEATR SIVFVRKRER VHELANWLRE AGINNCYLEG EMVQGKRNEA IKRLTEGRVN VLVATDVAAR GIDIPDVSHV FNFDMPRSGD TYLHRIGRTA RAGRKGTAIS LVEAHDHLLL GKVGRYIEEP IKARVIDELR PKTRAPSEKQ TGKPSKKVLA KRAEKKKAKE KEKPRVKKRH RDTKNIGKRR KPSGTGVPPQ TTEE
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