| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2695 |
|---|
| Symbol | hcaD |
|---|
| ID | 6142684 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | + |
|---|
| Start bp | 2767381 |
|---|
| End bp | 2768583 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641617566 |
|---|
| Product | phenylpropionate dioxygenase ferredoxin reductase subunit |
|---|
| Protein accession | YP_001744731 |
|---|
| Protein GI | 170683500 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0446] Uncharacterized NAD(FAD)-dependent dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGAAA AAACGATCAT TATTGTCGGT GGCGGGCAAG CGGCGGCAAT GGCTGCGGCC
TCGCTACGCC AGCAAGGGTT CACCGGTGAG CTGCATCTGT TTTCCGATGA GCAACATCTT
CCTTATGAAC GCCCCCCGCT CTCGAAATCC ATGTTGCTGG AAGATTCCCC ACAGTTGCAG
TCTGTGTTAC CCGCTCACTG GTGGCAGGAA AACAATGTTC ATCTGCATTC CGGTGTAACC
ATCAAAACAT TGGGCCGCGA CACACGAGAG TTAGTGTTAG CTAACGGCGA AAGCTGGCAC
TGGGATCAGC TTTTTATAGC AACCGGCGCG GCAGCCAGAC CGCTGCCGTT GCTTGATGCA
CTGGGAGAAC GCTGCTTTAC TCTGCGCCAT GCCGGCGATG CCGCCAGACT GCGAGAAGTT
CTGCAGCCCG AACGGTCAGT CGTGATTGTC GGTGCCGGAA CTATTGGTCT GGAACTGGCT
GCCAGCGCCA CGCAGCGTGG ATGTAAGGTG ACAGTGATTG AACTGGCGGC AACCGTCATG
GGCCGTAATG CACCACCGCC CGTGCAACAC TATCTTTTAC AGCGCCATCA GCAGGCTGGT
GTGCGCATTC TGCTCAATAA TGCCATTGAA CATGTGGTCG ATGGTGAAAA CGTAGAACTG
ACGCTGCAAA GTGGCGAAAC GCTTCGGGCC GATGTGGTGA TTTACGGTAT TGGTATCAGC
GCCAACGACC AACTGGCTCG CGAGGCCAAC CTTGATACTG CCAATGGCAT TGTCATTGAT
GAGGCTTGCC GCACCTGCGA TCCCGCGATC TTTGCCGGTG GCGATGTGGC AATCACCCGT
CTTGATAATG GTGCACTACA CCGCTGCGAA AGCTGGGAAA ACGCCAATAA CCAGGCGCAA
ATTGCCGCTT CCGCAATGTT GGGGCTACCG CTTCCGCGAC TGCCGCCGCC GTGGTTCTGG
AGCGATCAGT ACAGTGATAA CTTACAGTTT ATTGGCGATA TGCATGGCGA TGACTGGCTT
TGTCGTGGCA ACCCGGAAAC TCAGAAGGCG ATTTGGTTTA ATCTGCAAAA CGGCGTGCTT
ATCGGTGCAG TCACGCTGAA TCAGGGCCGT GAGATTCGCC CAATCCGCAA ATGGATCCAG
AGCGGCAAAA CGTTTGATGC GAAACTGCTG ACAGATGAGG ACATCGCGCT TAAATCACTG
TAA
|
|---|
| Protein sequence | MKEKTIIIVG GGQAAAMAAA SLRQQGFTGE LHLFSDEQHL PYERPPLSKS MLLEDSPQLQ
SVLPAHWWQE NNVHLHSGVT IKTLGRDTRE LVLANGESWH WDQLFIATGA AARPLPLLDA
LGERCFTLRH AGDAARLREV LQPERSVVIV GAGTIGLELA ASATQRGCKV TVIELAATVM
GRNAPPPVQH YLLQRHQQAG VRILLNNAIE HVVDGENVEL TLQSGETLRA DVVIYGIGIS
ANDQLAREAN LDTANGIVID EACRTCDPAI FAGGDVAITR LDNGALHRCE SWENANNQAQ
IAASAMLGLP LPRLPPPWFW SDQYSDNLQF IGDMHGDDWL CRGNPETQKA IWFNLQNGVL
IGAVTLNQGR EIRPIRKWIQ SGKTFDAKLL TDEDIALKSL
|
|---|
| |