Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_2671 |
Symbol | pbpC |
ID | 6144527 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 2740971 |
End bp | 2743283 |
Gene Length | 2313 bp |
Protein Length | 770 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 641617542 |
Product | penicillin-binding protein 1C |
Protein accession | YP_001744707 |
Protein GI | 170683227 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 0.122147 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTCGCT TGTTAACCAA ACGCGGCTGC TGGATAACGC TGGCAGCTGC GCCATTTCTC CTTTTTCTTG CAGCGTGGGG AGCAGATAAA CTCTGGCCTC TACCGCTGCA TGAAGTCAAT CCCGCACGAG TGGTTGTGGC GCAGGATGGG ACGCCGCTCT GGCGCTTTGC CGATGCGGAA GGCATCTGGC GTTATCCGGT AACAATCGAA GATGTTTCTC CACGTTACCT TGAAGCGCTG ATCAATTATG AAGATCGCTG GTTCTGGAAG CATCCGGGGG TGAATCCATT CTCGGTGGCG CGCGCAGCAT GGCAAGATCT CACTTCGGGA AGGGTTATTT CCGGTGGCAG CACGCTCACT ATGCAGGTTG CTCGTCTGCT TGATCCTCAC CCCAAAACAT TTGGCGGCAA AATTCGCCAG CTCTGGCGCG CGTTGCAACT GGAGTGGCAT CTGTCTAAGC GTGAAATTCT GACCTTGTAT CTTAACCGCG CTCCGTTTGG CGGTACGTTG CAGGGGATCG GTGCGGCAAG TTGGGCTTAT CTCGGAAAAT CGCCTGCGAA TTTAAGCTAT TCCGAGGCGG CAATGCTGGC GGTGTTGCCG CAAGCGCCCA GCCGACTGCG CCCGGATCGC TGGCCGGAAC GTGCCGAAGC CGCGCGTAAT AAAGTGCTCG AAAGGATGGC CGTGCAAGGT GTGTGGTCCC GTGAGCAGGT AAAAGAGTCA AGGGAAGAAC CCATCTGGCT GGCACCCCGA CAAATGCCGC AACTGGCACC GCTGTTTTCG CGCATGATGC TCGGTAAAAG CAAAAGCGAC AAAATCGTTA CGACGCTGGA TGCCGGTCTT CAACGACGTC TGGAAGAACT GGCGCAAAAC TGGAAAGGAC GATTACCACC GCGCAGCTCA CTGGCGATGA TCGTGGTTGA TCATACCGAT ATGCGTGTTC GCGGCTGGGT GGGTTCGGTT GATCTCAACG ATGATTCACG CTTTGGTCAT GTTGATATGG TCAATGCGAT CCGATCGCCA GGATCGGTGC TCAAACCGTT TGTTTATGGT CTGGCGCTGG ATGAAGGCTT GATCCACCCG GCATCGCTGT TGCAAGACGT CCCCCGACGC ACCGGTGATT ACCGACCTGG CAACTTTGAC AGCGGTTTTC ATGGCCCGAT CAGCATGAGT GAGGCGCTGG TGCGATCGCT GAACTTACCT GCTGTGCAGG TGCTGGAAGC CTATGGACCG AAACGGTTTG CGGCAAAGTT ACGCAATGTT GGATTGCCGT TATATTTGCC CAACGGTGCT GCACCGAATC TTTCGCTCAT TCTCGGCGGC GCTGGCGCAA AACTGGAAGA TATGGCGGCA GCGTATACCG CGTTTGCTCG CCACGGCAAG GCAGGCAAAT TGCGCTTACA GCCTGACGAT CCGCTGCTTG AACGGCCTTT AATGTCGTCG GGGGCTGCGT GGATCATTCG CCGGATTATG GCTGATGAAG CGCAACCCTT GCCGGATGGT GCCTTGCCGC GCGTCGCCCC ACTGGCATGG AAAACGGGCA CCAGCTATGG CTATCGTGAT GCCTGGGCGA TTGGGGTTAA CGCTCGCTAT GTCATTGGGA TCTGGACTGG CAGACCGGAC GGCACGCCCG TTGTTGGTCA GTTTGGCTTT GCCAGCGCCG TACCATTGTT GAATCAGGTC AATAATATCT TACTGTCGCG CAGTGCGAAT CTGCCGGAAG ACCCACGTCC TGACTCTGTA AGTCGTGGCG TTATCTGCTG GCCGGGCGGA CAGTCTTTGC CGGAAGGTGA CAGTAACTGT CGCCGCCGCC TGGCAACCTG GCTGCTGGAC GGGAGTCAGC CGCCAACTCT ATTACTGCCG GAGCAGGAAG GCATTAATGG CATTCGTTTC CCCATCTGGC TGGATGAAAA CGGCAAACGT GTTGCCGCTG ATTGCCCTCA GGCGCGACAA GAAATGATAA ATGTCTGGCC GCTACCGCTG GAACCCTGGC TGCCCGCATC AGAACGTCGC GCTGTGCGCT TGCCACCGGC CTCGACAATT TGCCCGCCAT ACGGTCACGA TGCACAACTC CCGCTGCAGC TAACAGGTGT GCGCGATGGC GCGATTATTA AACGTTTACC GGGCGCAGCG GAAGCGACTT TGCCGTTACA ATCAAGTGGA GGGGCAGGTG AACGCTGGTG GTTTCTGAAC GGCGAACCGT TAACTGAACG TGGGCGCAAC GTGACCCTGC ATTTGACGGA TAAAGGCGAT TATCAATTGC TGGTGATGGA TGAGGTGGGG CAAATAGCGA CAGTGAAATT TGTCATGCAA TAG
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Protein sequence | MPRLLTKRGC WITLAAAPFL LFLAAWGADK LWPLPLHEVN PARVVVAQDG TPLWRFADAE GIWRYPVTIE DVSPRYLEAL INYEDRWFWK HPGVNPFSVA RAAWQDLTSG RVISGGSTLT MQVARLLDPH PKTFGGKIRQ LWRALQLEWH LSKREILTLY LNRAPFGGTL QGIGAASWAY LGKSPANLSY SEAAMLAVLP QAPSRLRPDR WPERAEAARN KVLERMAVQG VWSREQVKES REEPIWLAPR QMPQLAPLFS RMMLGKSKSD KIVTTLDAGL QRRLEELAQN WKGRLPPRSS LAMIVVDHTD MRVRGWVGSV DLNDDSRFGH VDMVNAIRSP GSVLKPFVYG LALDEGLIHP ASLLQDVPRR TGDYRPGNFD SGFHGPISMS EALVRSLNLP AVQVLEAYGP KRFAAKLRNV GLPLYLPNGA APNLSLILGG AGAKLEDMAA AYTAFARHGK AGKLRLQPDD PLLERPLMSS GAAWIIRRIM ADEAQPLPDG ALPRVAPLAW KTGTSYGYRD AWAIGVNARY VIGIWTGRPD GTPVVGQFGF ASAVPLLNQV NNILLSRSAN LPEDPRPDSV SRGVICWPGG QSLPEGDSNC RRRLATWLLD GSQPPTLLLP EQEGINGIRF PIWLDENGKR VAADCPQARQ EMINVWPLPL EPWLPASERR AVRLPPASTI CPPYGHDAQL PLQLTGVRDG AIIKRLPGAA EATLPLQSSG GAGERWWFLN GEPLTERGRN VTLHLTDKGD YQLLVMDEVG QIATVKFVMQ
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