| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2566 |
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| Symbol | ligA |
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| ID | 6145611 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 2619139 |
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| End bp | 2621154 |
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| Gene Length | 2016 bp |
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| Protein Length | 671 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 641617437 |
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| Product | NAD-dependent DNA ligase LigA |
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| Protein accession | YP_001744602 |
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| Protein GI | 170680446 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000140501 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATCAA TCGAACAACA ACTGACAGAA CTGCGAACGA CGCTTCGCCA TCATGAATAT
CTTTATCATG TGATGGATGC GCCGGAAATT CCCGACGCGG AATACGACAG GTTGATGCGC
GAACTGCGCG AGCTGGAAAC CAAACATCCA GAACTGATTA CGCCTGATTC GCCTACCCAA
CGTGTAGGTG CTGCGCCGCT GGCGGCTTTC AGCCAGATCC GCCATGAAGT GCCAATGCTG
TCGCTGGATA ACGTTTTTGA TGAAGAAAGC TTTCTTGCCT TCAACAAACG AGTGCAGGAC
CGTCTGAAAA GCAACGAGAA AGTCACCTGG TGCTGTGAGC TGAAGCTGGA TGGTCTTGCC
GTCAGTATTC TGTATGAAAA TGGTGTTTTA GTCAGTGCCG CGACGCGTGG CGATGGCACC
ACCGGGGAAG ATATCACGTC TAATGTGCGT ACTATTCGCG CCATTCCGCT GAAGCTACAC
GGAGAGAATA TCCCGGCGCG TCTGGAAGTG CGTGGTGAAG TGTTCCTGCC GCAGGCGGGG
TTCGAAAAGA TTAACGAAGA TGCGCGACGC ACGGGCGGGA AAGTTTTTGC TAACCCACGT
AATGCGGCAG CTGGTTCACT GCGTCAGCTT GATCCGCGTA TTACAGCGAA GCGACCGCTC
ACTTTTTTCT GCTATGGCGT TGGTGTTCTG GAAGGTGGCG AGCTGCCGGA TACTCATCTT
GGCCGCTTAC TGCAATTTAA AAAGTGGGGG TTGCCGGTCA GCGATCGGGT AACGCTTTGT
GAATCGGCGG AAGAAGTGCT GGCGTTCTAT CACAAAGTGG AAGAAGACCG CCCGACGCTG
GGCTTTGATA TCGACGGCGT GGTGATTAAA GTCAACTCAC TGGCACAGCA GGAGCAGCTT
GGCTTTGTCG CGCGTGCCCC GCGCTGGGCG GTAGCGTTTA AATTTCCGGC GCAGGAACAG
ATGACCTTTG TGCGTGACGT CGAGTTTCAG GTTGGGCGTA CTGGCGCGAT TACGCCTGTT
GCGCGTCTGG AACCTGTCCA TGTTGCTGGC GTGCTGGTGA GTAACGCAAC CTTACACAAT
GCGGATGAAA TCGAACGTCT TGGTTTACGC ATTGGCGATA AAGTGGTGAT TCGCCGCGCT
GGCGACGTGA TCCCGCAGGT GGTTAACGTC GTGCTTTCTG AACGCCCGGA AGATACCCGT
GAGGTTGTAT TCCCGACGCA TTGTCCGGTA TGTGGTTCTG ACGTTGAGCG TGTGGAAGGT
GAAGCGGTTG CCCGCTGTAC CGGTGGCCTG ATTTGCGGTG CGCAGCGTAA AGAGTCGCTG
AAACACTTTG TTTCCCGCCG TGCGATGGAT GTTGACGGAA TGGGCGACAA AATCATCGAT
CAGCTGGTTG AAAAAGAATA TGTCCACACT CCGGCGGATC TGTTCAAACT CACCGCAGGC
AAACTGACCG GACTGGAGCG TATGGGGCCA AAATCGGCAC AAAACGTGGT TAACGCGCTG
GAAAAAGCGA AAGAAACCAC CTTTGCTCGC TTCCTCTATG CACTTGGCAT CCGTGAAGTC
GGCGAGGCCA CCGCAGCAGG TCTGGCGGCA TATTTCGGCA CGCTGGAAGC GCTGGAAGCC
GCTTCGATTG AAGAGCTGCA AAAGGTACCT GATGTTGGTA TTGTCGTTGC CTCCCACGTT
CACAACTTCT TTGCCGAAGA AAGCAACCGC AATGTCATCA GCGAGCTGTT GGCGGAAGGT
GTTCACTGGC CTGAGCCGAT CGTTATCAAT GCGGAAGAGA TTGACAGTCC GTTTGCTGGT
AAAACCGTGG TGCTTACGGG CAGCTTAAGC CAGATGTCGC GTGATGACGC TAAAGCTCGA
CTGGTCGAAC TGGGGGCGAA AGTCGCGGGC AGCGTGTCGA AGAAAACCGA TCTGGTGATA
GCGGGTGAAG CTGCAGGATC TAAACTGGCG AAGGCGCAGG AACTGGGCAT TGAAGTCATC
GACGAAACGG AAATGCTGCG TTTGCTGGGT AGCTGA
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| Protein sequence | MESIEQQLTE LRTTLRHHEY LYHVMDAPEI PDAEYDRLMR ELRELETKHP ELITPDSPTQ
RVGAAPLAAF SQIRHEVPML SLDNVFDEES FLAFNKRVQD RLKSNEKVTW CCELKLDGLA
VSILYENGVL VSAATRGDGT TGEDITSNVR TIRAIPLKLH GENIPARLEV RGEVFLPQAG
FEKINEDARR TGGKVFANPR NAAAGSLRQL DPRITAKRPL TFFCYGVGVL EGGELPDTHL
GRLLQFKKWG LPVSDRVTLC ESAEEVLAFY HKVEEDRPTL GFDIDGVVIK VNSLAQQEQL
GFVARAPRWA VAFKFPAQEQ MTFVRDVEFQ VGRTGAITPV ARLEPVHVAG VLVSNATLHN
ADEIERLGLR IGDKVVIRRA GDVIPQVVNV VLSERPEDTR EVVFPTHCPV CGSDVERVEG
EAVARCTGGL ICGAQRKESL KHFVSRRAMD VDGMGDKIID QLVEKEYVHT PADLFKLTAG
KLTGLERMGP KSAQNVVNAL EKAKETTFAR FLYALGIREV GEATAAGLAA YFGTLEALEA
ASIEELQKVP DVGIVVASHV HNFFAEESNR NVISELLAEG VHWPEPIVIN AEEIDSPFAG
KTVVLTGSLS QMSRDDAKAR LVELGAKVAG SVSKKTDLVI AGEAAGSKLA KAQELGIEVI
DETEMLRLLG S
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