| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2371 |
|---|
| Symbol | |
|---|
| ID | 6146048 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | + |
|---|
| Start bp | 2407706 |
|---|
| End bp | 2408356 |
|---|
| Gene Length | 651 bp |
|---|
| Protein Length | 216 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641617244 |
|---|
| Product | 3-oxoacid CoA-transferase, B subunit |
|---|
| Protein accession | YP_001744416 |
|---|
| Protein GI | 170682047 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2057] Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit |
|---|
| TIGRFAM ID | [TIGR02428] 3-oxoacid CoA-transferase, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0826912 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 55 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGCGA AACAACGTAT TGCGCGCCGT GTGGCGCAAG AGCTTCGTGA TGGTGACATC
GTTAACTTAG GGATCGGTTT ACCCACAATG GTCGCCAATT ATTTACCGGA GGGTATTCAT
ATCACTCTGC AATCGGAAAA CGGCTTCCTC GGTTTAGGCC CGGTCACGAC AGCGCATCCA
GATCTGGTGA ACGCTGGCGG ACAACCGTGC GGTGTTTTAC CCGGTGCAGC CATGTTTGAT
AGCGCCATGT CATTTGCGCT AATCCGTGGC GGTCATATTG ATGCCTGCGT GCTCGGCGGT
TTGCAAGTAG ACGAAGAAGC AAACCTCGCG AACTGGGTAG TGCCTGGGAA AATGGTGCCC
GGTATGGGTG GCGCGATGGA TCTGGTGACC GGGTCGCGCA AAGTGATCAT CGCCATGGAA
CATTGCGCCA AAGATGGTTC AGCAAAAATT TTGCGCCGCT GCACCATGCC TCTCACTGCG
CAACATGCGG TGCATATGCT GGTTACTGAA CTGGCTGTCT TTCGTTTTAT TGACGGCAAA
ATGTGGCTCA CCGAAATTGC CGACGGGTGT GATTTAGCCA CCGTGCGTGC CAAAACAGAA
GCTCGGTTTG AAGTAGCTGC CGATCTGAAT ACGCAACGGG GTGATTTATG A
|
|---|
| Protein sequence | MDAKQRIARR VAQELRDGDI VNLGIGLPTM VANYLPEGIH ITLQSENGFL GLGPVTTAHP
DLVNAGGQPC GVLPGAAMFD SAMSFALIRG GHIDACVLGG LQVDEEANLA NWVVPGKMVP
GMGGAMDLVT GSRKVIIAME HCAKDGSAKI LRRCTMPLTA QHAVHMLVTE LAVFRFIDGK
MWLTEIADGC DLATVRAKTE ARFEVAADLN TQRGDL
|
|---|
| |