| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2346 |
|---|
| Symbol | ccmD |
|---|
| ID | 6144187 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 2379662 |
|---|
| End bp | 2379871 |
|---|
| Gene Length | 210 bp |
|---|
| Protein Length | 69 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641617219 |
|---|
| Product | heme exporter protein D |
|---|
| Protein accession | YP_001744391 |
|---|
| Protein GI | 170681750 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3114] Heme exporter protein D |
|---|
| TIGRFAM ID | [TIGR03141] heme exporter protein CcmD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 0.74557 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCCTG CATTTGCTTC CTGGAATGAA TTTTTCGCAA TGGGCGGTTA CGCCTTTTTT
GTCTGGCTGG CGGTGGTGAT GACCGTCATT CCGCTGGTGG TTTTGGTCGT GCACTCGGTG
ATGCAGCATC GCGCAATTCT GCGTGGCGTG GCGCAACAGC GGGCGCGTGA GGCGCGTTTA
CGTGCTGCGC AACAGCAGGA GGCTGCATGA
|
|---|
| Protein sequence | MTPAFASWNE FFAMGGYAFF VWLAVVMTVI PLVVLVVHSV MQHRAILRGV AQQRAREARL
RAAQQQEAA
|
|---|
| |