| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2308 |
|---|
| Symbol | |
|---|
| ID | 6142796 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 2338555 |
|---|
| End bp | 2339805 |
|---|
| Gene Length | 1251 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641617182 |
|---|
| Product | NupC family nucleoside transporter |
|---|
| Protein accession | YP_001744355 |
|---|
| Protein GI | 170684054 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1972] Nucleoside permease |
|---|
| TIGRFAM ID | [TIGR00804] nucleoside transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.903484 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.000933793 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGATGTCA TGAGAAGTGT TCTGGGAATG GTGGTATTGC TGGCAATTGC ATTTTTGCTG
TCAGTAAACA AGAAGAGGAT CAGCCTGCGT ACCGTTGGCG CGGCGTTAGT GTTACAGGTC
GTGATTGGCG GCATTATGCT TTGGTTACCG CCAGGGCGTT GGGTCGCTGA AAAAGTCGCT
TTTGGCGTCC ATAAAGTGAT GGCGTACAGC GACGCGGGTA GCGCATTTAT CTTCGGTTCG
CTGGTCGGGC CGAAAATGGA CACGCTGTTT GATGGTGCAG GATTTATCTT TGGTTTCAGA
GTATTACCGG CAATTATCTT CGTCACCGCG CTGGTGAGTA TTCTCTACTA CATCGGTGTG
ATGGGGATCT TAATTCGCAT TCTCGGCGGT ATCTTCCAGA AAGCATTAAA TATCAGCAAG
ATCGAGTCAT TCGTCGCGGT CACTACCATT TTCCTCGGGC AAAACGAAAT TCCGGCAATC
GTCAAACCCT TTATCGATCG GCTGAATCGC AATGAATTAT TTACAGCGAT TTGTAGTGGC
ATGGCCTCGA TTGCTGGTTC GACAATGATT GGTTACGCCG CACTGGGCGT ACCTGTGGAA
TATTTGCTGG CGGCATCGTT AATGGCGATC CCAGGCGGGA TCTTGTTTGC CCGCCTGTTA
AGCCCGGCTA CGGAATCTTC GCAGGTTTCT TTTAATAACC TCTCTTTCAC CGAAACACCG
CCAAAAAGTA TTATTGAGGC CGCTGCGACA GGGGCAATGA CCGGGCTGAA AATCGCTGCG
GGTGTGGCAA CAGTGGTGAT GGCATTTGTT GCCATCATTG CGTTAATTAA CGGTATTATC
GGCGGCGTTG GCGGCTGGTT TGGTTTTGAG CAAGCCTCGC TGGAGTCCAT TTTAGGTTAT
CTGCTGGCCC CGCTGGCGTG GGTGATGGGG GTTGACTGGA GTGATGCAAA TCTTGCCGGG
AGTTTGATTG GGCAGAAGTT GGCGATCAAT GAATTTGTCG CTTACCTCAA TTTCTCACCT
TATCTGCAAA CAGCTGGCAC GCTCGATGCT AAAACCGTGG CGATTATTTC CTTCGCGTTG
TGCGGTTTCG CTAACTTTGG TTCTATCGGG GTAGTGGTTG GGGCATTTTC TGCGGTTGCG
CCACACCGCG CGCCGGAAAT CGCCCAGCTT GGTTTACGCG CGCTGGCGGC GGCGACACTT
TCTAACCTGA TGAGTGCCAC CATTGCAGGA TTCTTTATTG GCTTAGCGTA G
|
|---|
| Protein sequence | MDVMRSVLGM VVLLAIAFLL SVNKKRISLR TVGAALVLQV VIGGIMLWLP PGRWVAEKVA
FGVHKVMAYS DAGSAFIFGS LVGPKMDTLF DGAGFIFGFR VLPAIIFVTA LVSILYYIGV
MGILIRILGG IFQKALNISK IESFVAVTTI FLGQNEIPAI VKPFIDRLNR NELFTAICSG
MASIAGSTMI GYAALGVPVE YLLAASLMAI PGGILFARLL SPATESSQVS FNNLSFTETP
PKSIIEAAAT GAMTGLKIAA GVATVVMAFV AIIALINGII GGVGGWFGFE QASLESILGY
LLAPLAWVMG VDWSDANLAG SLIGQKLAIN EFVAYLNFSP YLQTAGTLDA KTVAIISFAL
CGFANFGSIG VVVGAFSAVA PHRAPEIAQL GLRALAAATL SNLMSATIAG FFIGLA
|
|---|
| |