Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_2306 |
Symbol | nfo |
ID | 6145278 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | + |
Start bp | 2336551 |
End bp | 2337408 |
Gene Length | 858 bp |
Protein Length | 285 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641617180 |
Product | endonuclease IV |
Protein accession | YP_001744353 |
Protein GI | 170681734 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0648] Endonuclease IV |
TIGRFAM ID | [TIGR00587] apurinic endonuclease (APN1) |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 0.0013882 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAATACA TTGGAGCGCA CGTTAGTGCT GCTGGCGGTC TGGCAAATGC CGCAATTCGC GCCGCCGAAA TCGACGCAAC CGCGTTTGCC TTGTTCACCA AAAACCAACG TCAGTGGCGT GCCGCACCGC TCACGACGCA AACCATCGAT GAATTCAAAG CCGCCTGTGA AAAATATCAC TACACATCGG CGCAAATTCT TCCCCACGAC AGTTATCTGA TTAACCTCGG ACATCCGGTC ACTGAAGCTC TGGAAAAATC GCGCGATGCC TTTATAGATG AAATGCAGCG TTGCGAACAG CTGGGGCTTT CTTTGCTCAA CTTCCACCCT GGCAGCCATC TGATGCAGAT TTCAGAAGAG GATTGCCTTG CGCGTATTGC CGAATCCATC AACATTGCGC TGGATAAAAC TCATGGTGTG ACAGCGGTGA TTGAAAACAC CGCCGGTCAG GGCAGTAACT TAGGGTTTAA ATTCGAACAT CTCGCGGCGA TTATCGACGG CGTGGAAGAT AAATCCCGCG TCGGCGTCTG CATTGATACC TGCCATGCTT TCGCTGCCGG GTATGATTTG CGTACTTCTG CCGAATGCGA GAAAACGTTC GCGGATTTTG CCCGTATTGT CGGCTTTAAG TATCTGCGCG GGATGCACCT TAACGATGCG AAAAGCACCT TTGGCAGCCG CGTTGACCGC CATCATAGCC TCGGTGAAGG CAATATCGGT CATGATGCGT TCCGCTGGAT CATGCAGGAC GACCGTTTCG ACGGCATTCC GCTGATCCTT GAAACCATCA ACCCGGATAT CTGGGCAGAA GAGATCGCCT GGCTGAAAGC GCAACAAACT GAAAAAGCGG TAGCCTGA
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Protein sequence | MKYIGAHVSA AGGLANAAIR AAEIDATAFA LFTKNQRQWR AAPLTTQTID EFKAACEKYH YTSAQILPHD SYLINLGHPV TEALEKSRDA FIDEMQRCEQ LGLSLLNFHP GSHLMQISEE DCLARIAESI NIALDKTHGV TAVIENTAGQ GSNLGFKFEH LAAIIDGVED KSRVGVCIDT CHAFAAGYDL RTSAECEKTF ADFARIVGFK YLRGMHLNDA KSTFGSRVDR HHSLGEGNIG HDAFRWIMQD DRFDGIPLIL ETINPDIWAE EIAWLKAQQT EKAVA
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