| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2280 |
|---|
| Symbol | cspD |
|---|
| ID | 6143199 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | + |
|---|
| Start bp | 2306316 |
|---|
| End bp | 2306540 |
|---|
| Gene Length | 225 bp |
|---|
| Protein Length | 74 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641617154 |
|---|
| Product | stationary phase/starvation inducible regulatory protein CspD |
|---|
| Protein accession | YP_001744327 |
|---|
| Protein GI | 170683368 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1278] Cold shock proteins |
|---|
| TIGRFAM ID | [TIGR02381] cold shock domain protein CspD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00002354 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.0221589 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAAGG GTACTGTTAA GTGGTTCAAC AATGCCAAAG GGTTTGGTTT CATCTGCCCT
GAAGGCGGCG GCGAAGATAT TTTCGCTCAT TATTCCACCA TTCAGATGGA TGGTTACAGA
ACGCTAAAAG CTGGACAATC CGTTCAGTTT GATGTCCACC AGGGGCCAAA AGGCAATCAC
GCCAGTGTTA TTGTGCCCGT CGAAGTAGAA GCGGCAGTCG CATAG
|
|---|
| Protein sequence | MEKGTVKWFN NAKGFGFICP EGGGEDIFAH YSTIQMDGYR TLKAGQSVQF DVHQGPKGNH
ASVIVPVEVE AAVA
|
|---|
| |