| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2234 |
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| Symbol | cydD |
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| ID | 6145064 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 2256383 |
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| End bp | 2258149 |
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| Gene Length | 1767 bp |
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| Protein Length | 588 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641617110 |
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| Product | cysteine/glutathione ABC transporter membrane/ATP-binding component |
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| Protein accession | YP_001744284 |
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| Protein GI | 170682589 |
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| COG category | [C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG4988] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components |
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| TIGRFAM ID | [TIGR02857] thiol reductant ABC exporter, CydD subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.161648 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAAAT CCCGTCAAAA AGAGTTAACC CGCTGGTTAA AACAGCAAAG CGTCATCTCC
CAACGTTGGC TGAATATTTC TCGTCTGCTG GGCTTTGTGA GCGGCATATT GATCATTGCC
CAGGCCTGGT TCATGGCGCG AATTCTGCAA CATATGATTA TGGAGAATAT TCCCCGTGAA
GCCCTGCTGC TTCCCTTTAC GTTACTGGTT CTGACCTTTG TACTGCGCGC ATGGGTGGTC
TGGTTACGCG AACGGGTGGG TTATCACGCC GGGCAGCATA TCCGCTTTGC CATCCGCCGT
CAGGTTCTCG ACCGTCTGCA ACAAGCAGGG CCAGCGTGGA TTCAGGGTAA ACCGGCGGGG
AGCTGGGCGA CGCTGGTACT CGAGCAAATT GACGATATGC ATGATTACTA TGCACGCTAC
CTGCCGCAAA TGGCGCTGGC AGTGTCGGTG CCGTTGCTGA TTGTGGTGGC TATCTTCCCC
TCTAACTGGG CTGCGGCGCT CATTCTGCTG GGCACTGCTC CGTTAATTCC GTTGTTTATG
GCGCTGGTTG GAATGGGGGC TGCCGATGCT AACCGACGTA ACTTTCTCGC TCTTGCTCGC
TTAAGTGGGC ATTTTCTCGA TCGCCTGCGC GGCATGGAAA CATTGCGTAT TTTTGGTCGT
GGTGAAGCTG AAATTGAAAG TATTCGTTCT GCTTCGGAAG ATTTCCGCCA ACGGACAATG
GAAGTGCTAC GGCTGGCGTT TTTATCCTCC GGCATTCTCG AATTTTTTAC CTCGCTGTCA
ATTGCTCTGG TGGCGGTCTA CTTTGGTTTT TCCTATCTCG GCGAGCTGGA TTTTGGTCAC
TATGATACTG GCGTGACGCT GGCTGCGGGT TTTCTGGCCC TGATCCTTGC GCCGGAGTTT
TTCCAGCCAT TACGCGATCT CGGTACGTTT TATCATGCTA AAGCCCAGGC TGTTGGTGCA
GCTGACAGTT TGAAAACGTT TATGGAAACC CCGCTTGCCC ATCCGCAGCG TGGTGAGGCG
GAATTAGCAT CGACCGATCC GGTGACCATT GAAGCCGAGG AGCTGTTTAT TACATCACCA
GAAGGTAAAA CGCTGGCCGG ACCGCTGAAC TTTACTTTGC CAGCAGGCCA ACGTGCAGTG
TTGGTTGGTC GCAGCGGTTC AGGTAAAAGC TCACTGCTGA ACGCGCTTTC TGGTTTTCTC
TCATATCAGG GATCGCTACG AATCAACGGG ATAGAATTAC GCGATTTATC ACCAGAATCA
TGGCGTAAAC ATCTCTCCTG GGTTGGGCAA AACCCACAAT TACCGGCAGC AACACTACGG
GATAACGTAC TACTGGCGCG ACCTGATGCC AACGAACACG AGTTACAAGC AGCACTGGAT
AACGCCTGGG TCAGTGAGTT TCTACCGCTC CTGCCACAAG GCGTTGATAC GCCTGTTGGT
GACCAGGCTG CCCGCCTTTC CGTGGGGCAG GCGCAGCGCG TGGCGGTGGC CCGAGCATTA
CTGAATCCCT GTTCGCTATT ACTGTTGGAT GAACCCGCTG CCAGCCTTGA TGCTCACAGT
GAACAGCGCG TAATGGAGGC GCTTAATGCC GCCTCTCTGC GCCAGACAAC GTTAATGGTC
ACCCACCAGT TAGAAGATCT TGCTGACTGG GATGTCATTT GGGTAATGCA GGATGGTCAG
ATTATTGAGC AAGGACGTTA CGCGGAATTA AGCGTGGCTG GTGGTCCTTT CGCCACATTG
CTGGCCCATC GTCAGGAGGA GATTTAA
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| Protein sequence | MNKSRQKELT RWLKQQSVIS QRWLNISRLL GFVSGILIIA QAWFMARILQ HMIMENIPRE
ALLLPFTLLV LTFVLRAWVV WLRERVGYHA GQHIRFAIRR QVLDRLQQAG PAWIQGKPAG
SWATLVLEQI DDMHDYYARY LPQMALAVSV PLLIVVAIFP SNWAAALILL GTAPLIPLFM
ALVGMGAADA NRRNFLALAR LSGHFLDRLR GMETLRIFGR GEAEIESIRS ASEDFRQRTM
EVLRLAFLSS GILEFFTSLS IALVAVYFGF SYLGELDFGH YDTGVTLAAG FLALILAPEF
FQPLRDLGTF YHAKAQAVGA ADSLKTFMET PLAHPQRGEA ELASTDPVTI EAEELFITSP
EGKTLAGPLN FTLPAGQRAV LVGRSGSGKS SLLNALSGFL SYQGSLRING IELRDLSPES
WRKHLSWVGQ NPQLPAATLR DNVLLARPDA NEHELQAALD NAWVSEFLPL LPQGVDTPVG
DQAARLSVGQ AQRVAVARAL LNPCSLLLLD EPAASLDAHS EQRVMEALNA ASLRQTTLMV
THQLEDLADW DVIWVMQDGQ IIEQGRYAEL SVAGGPFATL LAHRQEEI
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