| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2181 |
|---|
| Symbol | |
|---|
| ID | 6147005 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 2189039 |
|---|
| End bp | 2189578 |
|---|
| Gene Length | 540 bp |
|---|
| Protein Length | 179 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 641617057 |
|---|
| Product | putative fimbrial protein |
|---|
| Protein accession | YP_001744231 |
|---|
| Protein GI | 170679821 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3539] P pilus assembly protein, pilin FimA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 0.614971 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA ATGTATTGGC GGCGTTTATA ACTGTGATAT GTACAACTTC AAGTGTTATG
GCGGCTGATG ATAATGCCAT CACGGATGGC TCGGTTACGT TTAATGGTAA AGTCATTGCT
CCTGCCTGTA CGCTGGTTGC TGCGACGAAA GATTCCGTGG TGACTTTACC AGATGTTAGT
GCAACGAAGT TGCAAAGTAA TGGTCAGGTT TCTGGGGTGC AAACTGATGT GCCAATTGCA
TTAGAAGATT GTGATATTAC CGTAACAAAA AATGCAACGT TCACTTTTAA TGGCACAGCG
GATACTACGC AGATTACAGC GTTTGCTAAC CAGGCCTCAT CTGAGGCTGC TACAAACGTG
GCCCTGCAAA TGTATATGAA TGATGGTACA ACGGTCATTA CGCCAGACAC AGAAACCGGG
AATATTTTGT TGCAGAGTGG AAATCAAACG CTAACTTTTA AAGTAGATTA TATCGCTACG
GGTAAAGCGA CGTCAGGTAA TGTCAATGCG GTAACAAATT TCCATATTAA TTATTATTAA
|
|---|
| Protein sequence | MKKNVLAAFI TVICTTSSVM AADDNAITDG SVTFNGKVIA PACTLVAATK DSVVTLPDVS
ATKLQSNGQV SGVQTDVPIA LEDCDITVTK NATFTFNGTA DTTQITAFAN QASSEAATNV
ALQMYMNDGT TVITPDTETG NILLQSGNQT LTFKVDYIAT GKATSGNVNA VTNFHINYY
|
|---|
| |