| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2157 |
|---|
| Symbol | helD |
|---|
| ID | 6146618 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 2161058 |
|---|
| End bp | 2163112 |
|---|
| Gene Length | 2055 bp |
|---|
| Protein Length | 684 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641617033 |
|---|
| Product | DNA helicase IV |
|---|
| Protein accession | YP_001744207 |
|---|
| Protein GI | 170681833 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00794949 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 0.209046 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTGA AAGCGACAAC GCTTGGAAAA CGTCTGGCAC AGCACCCTTA CGATCGGGCG
GTGATCCTCA ATGCCGGGAT TAAAGTCTCC GGCGATCGCC ACGAATACCT TATTCCTTTT
AATCAATTAC TGGCGATTCA CTGTAAGCGC GGTCTGGTAT GGGGCGAGCT GGAATTTGTA
CTGCCGGACG AAAAAGTGGT GCGTCTGCAC GGCACCGAAT GGGGCGAGAC GCAGCGTTTT
TACCATCATC TTGATACTCA CTGGCGGCGG TGGAGTGGGG AGATGAGCGA AATTGCGTCT
GGCGTTTTAC GTCAGCAACT GGATTTGATT GCCACGCGCA CCGGAGAAAA TAAATGGCTG
ACGCGTGAGC AAACCTCTGG TGTGCAGCAA CAAATCCGCC AGGCTTTGTC GGCGTTGCCG
TTGCCGGTTA ACCGACTGGA AGAATTCGAT AACTGCCGTG AGGCGTGGCG TAAATGTCAG
GCCTGGTTGA AGGACATTGA AGGCGCTCGG TTGCAGCATA ATCAGGCGTA TACCGAAGCC
ATGCTTACCG AGTATGCGGA TTTTTTCCGC CAGGTCGAGT CTTCACCGCT GAATCCGGCG
CAGGCCCGGG CAGTCGTTAA TGGCGAGCAT TCTTTGTTAG TGCTGGCTGG TGCAGGAAGC
GGAAAAACGT CGGTGCTGGT GGCCCGTGCA GGCTGGTTGC TGGCACGTGG TGAAGCGTCC
CCTGAGCAAA TTTTATTGCT GGCGTTTGGT CGCAAAGCCG CTGAAGAGAT GGACGAGCGT
ATTCGCGAAC GGCTACATAC CGAAGACATT ACCGCACGCA CATTTCATGC GCTGGCGCTG
CATATTATTC AGCAGGGCAG CAAAAAAGTT CCGATAGTCA GCAAACTGGA AAATGATACC
GCTGCCCGTC ATGAACTTTT TATTGCTGAG TGGCGCAAGC AATGCAGCGA AAAGAAAGCG
CAGGCGAAGG GCTGGCGGCA ATGGCTGACG GAAGAAATGC AGTGGTCAGT GCCAGAAGGT
AACTTCTGGG ATGATGAAAA ATTACAGCGT CGTCTTGCCT CACGCCTCGA TCGTTGGGTA
AGTCTGATGC GGATGCACGG TGGTGCACAG GCAGAAATGA TTGCCAGTGC ACCCGAAGAG
ATTCGCGATC TGTTCAGTAA ACGTATCAAG TTGATGGCTC CGTTATTAAA AGCCTGGAAA
GGTGCGCTGA AGGCAGAAAA CGCTGTCGAT TTTTCGGGCC TTATTCACCA GGCGATTGTG
ATTCTGGAGA AAGGTCGCTT TATCAGCCCG TGGAAGCATA TTCTGGTTGA TGAATTTCAG
GATATCTCGC CGCAGCGCGC AGCGTTGTTA GCGGCATTAC GCAAGCAAAA CAGTCAGACG
ACGTTGTTCG CCGTTGGTGA TGACTGGCAG GCGATTTATC GCTTCAGCGG TGCGCAAATG
TCGCTCACCA CCGCTTTCCA TGAAAACTTT GGTGAAGGTG ATCGCTGCGA TTTAGACACG
ACTTACCGTT TTAACAGTCG TATCGGTGAG GTGGCAAACC GGTTTATTCA GCAGAACCCA
GGCCAGCTGA AAAAGCCGCT AAACAGCTTA ACCAATGGAG ACAAAAAAGC CGTCACGTTA
TTGGATGAGA GTCAACTTGA CGCTTTGCTG GATAAGCTCT CTGGTTATGC CAAACCGGAA
GAGCGCATTC TGATCCTGGC GCGTTACCAT CACATGAGGC CTGCCAGCCT GGAAAAAGCG
GCAACACGCT GGCCGAAGTT GCAAATCGAC TTTATGACCA TTCATGCCAG CAAAGGGCAA
CAGGCGGATT ACGTCATCAT CGTTGGCTTG CAGGAGGGGA GTGATGGTTT TCCGGCTGCG
GCGCGGGAGT CGATTATGGA AGAGGCGCTA CTGCCACCGG TTGAGGATTT CCCGGACGCT
GAAGAACGGC GGTTAATGTA CGTGGCGCTG ACCCGGGCAC GCCATCGGGT ATGGGCACTG
TTTAACAAAG AGAATCCCTC TCCCTTTGTG GAAATACTGA AAAATCTGGA TGTGCCGGTG
GCGAGAAAAC CGTAA
|
|---|
| Protein sequence | MELKATTLGK RLAQHPYDRA VILNAGIKVS GDRHEYLIPF NQLLAIHCKR GLVWGELEFV
LPDEKVVRLH GTEWGETQRF YHHLDTHWRR WSGEMSEIAS GVLRQQLDLI ATRTGENKWL
TREQTSGVQQ QIRQALSALP LPVNRLEEFD NCREAWRKCQ AWLKDIEGAR LQHNQAYTEA
MLTEYADFFR QVESSPLNPA QARAVVNGEH SLLVLAGAGS GKTSVLVARA GWLLARGEAS
PEQILLLAFG RKAAEEMDER IRERLHTEDI TARTFHALAL HIIQQGSKKV PIVSKLENDT
AARHELFIAE WRKQCSEKKA QAKGWRQWLT EEMQWSVPEG NFWDDEKLQR RLASRLDRWV
SLMRMHGGAQ AEMIASAPEE IRDLFSKRIK LMAPLLKAWK GALKAENAVD FSGLIHQAIV
ILEKGRFISP WKHILVDEFQ DISPQRAALL AALRKQNSQT TLFAVGDDWQ AIYRFSGAQM
SLTTAFHENF GEGDRCDLDT TYRFNSRIGE VANRFIQQNP GQLKKPLNSL TNGDKKAVTL
LDESQLDALL DKLSGYAKPE ERILILARYH HMRPASLEKA ATRWPKLQID FMTIHASKGQ
QADYVIIVGL QEGSDGFPAA ARESIMEEAL LPPVEDFPDA EERRLMYVAL TRARHRVWAL
FNKENPSPFV EILKNLDVPV ARKP
|
|---|
| |