| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2041 |
|---|
| Symbol | rluC |
|---|
| ID | 6146596 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 2060627 |
|---|
| End bp | 2061586 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641616917 |
|---|
| Product | 23S rRNA pseudouridylate synthase C |
|---|
| Protein accession | YP_001744093 |
|---|
| Protein GI | 170684091 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000000000773418 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.000351853 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACAG AGACTCCATC CGTAAAAATT GTTGCTATCA CCGCTGACGA AGCGGGGCAA
CGTATCGATA ACTTTTTGCG TACCCAATTG AAAGGTGTAC CAAAAAGTAT GATTTACCGT
ATTTTGCGTA AAGGCGAAGT GCGGGTGAAC AAAAAACGTA TTAAGCCTGA ATATAAACTC
GAAGCGGGTG ATGAGGTACG TATCCCACCG GTTCGCGTTG CTGAACGGGA AGAAGAGGCG
GTTTCGCCAC ATCTGCAAAA GGTGGCAGCG CTGGCGGACG TCATCTTATA TGAAGATGAC
CATATCCTGG TGCTGAATAA ACCTTCCGGT ACGGCGGTAC ATGGCGGCAG TGGTTTAAGC
TTCGGCGTTA TCGAAGGTTT GCGGGCGTTG CGCCCGGAAG CGCGGTTCCT TGAACTGGTT
CATCGTCTCG ACCGGGACAC TTCAGGTGTG TTGCTGGTAG CGAAAAAACG CTCGGCGTTG
CGTTCTCTGC ATGAGCAATT ACGTGAAAAA GGGATGCAAA AAGATTACCT GGCGCTGGTG
CGCGGTCAGT GGCAGTCGCA TGTGAAGAGC GTTCAAGCGC CGTTATTGAA AAATATTTTG
CAAAGCGGCG AACGTATCGT GCGTGTCAGT CAGGAAGGCA AACCGTCGGA AACACGCTTT
AAAGTGGAAG AACGCTATGC ATTTGCCACC CTGGTGCGTT GTAGCCCGGT AACAGGGCGT
ACTCATCAGA TCCGTGTGCA TACACAATAT GCGGGTCATC CGATTGCCTT TGACGATCGC
TACGGTGACC GTGAATTTGA CAGACACCTC ACTGAAGCAG GCACGGGATT AAATCGCCTG
TTCCTGCACG CCGCAGCGTT GAAGTTTACT CATCCGGGGA CCGGTGAGGT GATGCGTATT
GAAGCGCCGA TGGATGAAGG TTTGAAGCGT TGTTTGCAAA AGCTGCGTAA CGCGCGCTAA
|
|---|
| Protein sequence | MKTETPSVKI VAITADEAGQ RIDNFLRTQL KGVPKSMIYR ILRKGEVRVN KKRIKPEYKL
EAGDEVRIPP VRVAEREEEA VSPHLQKVAA LADVILYEDD HILVLNKPSG TAVHGGSGLS
FGVIEGLRAL RPEARFLELV HRLDRDTSGV LLVAKKRSAL RSLHEQLREK GMQKDYLALV
RGQWQSHVKS VQAPLLKNIL QSGERIVRVS QEGKPSETRF KVEERYAFAT LVRCSPVTGR
THQIRVHTQY AGHPIAFDDR YGDREFDRHL TEAGTGLNRL FLHAAALKFT HPGTGEVMRI
EAPMDEGLKR CLQKLRNAR
|
|---|
| |